Figure 8.

Simulation results on the assembly of synthetic genomes using reads corrupted by substitution noise. The parameters are as follows. $G=10k;{\tilde{\ell }}_{\mathsf{\text{max}}}={\ell }_{\mathsf{\text{max}}}=500$, ${\tilde{\ell }}_{\mathsf{\text{int}}}=200$, ℓ_int = 100 with two sites of polymorphism within the flanked repeat. p= 1.5%, ∈= 5%.