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. 2014 Sep 10;15(Suppl 9):S6. doi: 10.1186/1471-2105-15-S9-S6

Table 3.

Performance comparison using AUC for DEG identification (weakly differentially expressed genes)

σ (τ) ν BADGE DESeq edgeR DSS EBSeq
0.75 0.001 0.793 0.656 0.680 0.603 0.687
(1.78) (0.099) (0.058) (0.084) (0.133) (0.031)
0.1 0.778 0.659 0.663 0.695 0.684
(0.092) (0.043) (0.062) (0.075) (0.049)
1.5 0.001 0.806 0.641 0.647 0.635 0.669
(0.44) (0.080) (0.028) (0.071) (0.134) (0.029)
0.1 0.823 0.687 0.680 0.724 0.682
(0.109) (0.072) (0.063) (0.104) (0.073)