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. 2014 Sep 18;10(9):e1003851. doi: 10.1371/journal.pcbi.1003851

Table 2. Selected features in the models.

Features Coefficients Hazard Ratio p-values in univariate COX-PH model
Pathway-based genomic model
KEGG_MELANOGENESIS* 1.075908 2.93266 0.00188
BIOCARTA_SRCRPTP_PATHWAY* 0.914698 2.49602 1.01e-7
BIOCARTA_AKAP13_PATHWAY* 0.828364 2.28957 0.00351
BIOCARTA_RARRXR_PATHWAY* 0.670795 1.95579 9.58e-6
BIOCARTA_VIP_PATHWAY* 0.635108 1.88723 2.15e-5
KEGG_FATTY_ACID_METABOLISM * 0.520653 1.68313 2.53e-6
BIOCARTA_G1_PATHWAY* 0.520446 1.68278 2.66e-6
KEGG_LINOLEIC_ACID_METABOLISM 0.368615 1.44573 3.55e-4
KEGG_LYSOSOME 0.300587 1.35065 2.2e-6
BIOCARTA_P53_PATHWAY* 0.239062 1.27006 8.74e-4
BIOCARTA_PYK2_PATHWAY* 0.158405 1.17164 1.29e-4
BIOCARTA_GABA_PATHWAY 0.139229 1.14939 0.0162
BIOCARTA_FEEDER_PATHWAY 0.110334 1.11665 0.0218
BIOCARTA_RNA_PATHWAY* 0.037978 1.03871 7.67e-5
BIOCARTA_IL5_PATHWAY 0.012039 1.01211 0.00895
Clinical model
Lymph Node Status* 0.375874 1.456264 4.46e-7
Tumor Size* 0.270893 1.311135 6.03e-7
Grade 0.126814 1.135206 4.92e-4
P53 0.043517 1.044478 0.0171

*: these pathways and clinical parameters are also selected by the combined model.