Table 3. Top 30 most frequent genes in the pathways of the genomic model and the combined model.
| Gene ID | Genomic Model Counts | Combined Model Counts | Weighted Genomic Model Counts* | Weighted Combined Model Counts* |
| PRKACB | 3 | 4 | 7.109452 | 4.46549683 |
| PRKACG | 3 | 4 | 7.109452 | 4.46549683 |
| PRKCB | 3 | 6 | 6.600318 | 6.54794229 |
| PRKCA | 3 | 6 | 6.600318 | 6.54794229 |
| CALM1 | 3 | 6 | 5.991523 | 6.32738762 |
| CALM2 | 3 | 6 | 5.991523 | 6.32738762 |
| CALM3 | 3 | 6 | 5.991523 | 6.32738762 |
| GNAQ | 3 | 4 | 5.991523 | 4.26250968 |
| SRC | 3 | 5 | 4.817049 | 5.3291015 |
| GSK3B | 2 | 3 | 4.615435 | 3.23989145 |
| CDC25A | 2 | 2 | 4.178799 | 2.25477095 |
| CDK1 | 2 | 2 | 4.178799 | 2.25477095 |
| PRKAR2A | 2 | 3 | 4.176796 | 3.26764027 |
| PRKAR2B | 2 | 3 | 4.176796 | 3.26764027 |
| HRAS | 2 | 4 | 4.104297 | 4.27393317 |
| MAP2K1 | 2 | 4 | 4.104297 | 4.27393317 |
| MAPK1 | 2 | 4 | 4.104297 | 4.27393317 |
| MAPK3 | 2 | 4 | 4.104297 | 4.27393317 |
| RAF1 | 2 | 4 | 4.104297 | 4.27393317 |
| MAP2K2 | 2 | 4 | 4.104297 | 4.27393317 |
| TP53 | 3 | 3 | 3.991545 | 3.03875447 |
| GRB2 | 2 | 4 | 3.667662 | 4.32604023 |
| CYCSP35 | 2 | 5 | 3.058867 | 5.12953106 |
| PLCG1 | 2 | 4 | 3.058867 | 4.13411496 |
| MAP3K1 | 2 | 3 | 3.058867 | 3.06465312 |
| E2F1 | 2 | 2 | 2.952836 | 2.0232666 |
| RB1 | 2 | 2 | 2.952836 | 2.0232666 |
| CCND1 | 2 | 2 | 2.952836 | 2.0232666 |
| CDK4 | 2 | 2 | 2.952836 | 2.0232666 |
| CCNE1 | 2 | 2 | 2.952836 | 2.0232666 |