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. Author manuscript; available in PMC: 2015 Sep 1.
Published in final edited form as: FEBS J. 2014 Apr 7;281(18):4224–4239. doi: 10.1111/febs.12784

Table 1.

Data Collection and Refinement Statistics for sMAT in the apo form and ligand-bound forms

sMAT sMAT+AdoMet sMAT+AdoMet sMAT+AdoEth
Added in crystallization --- SAM ADP, Met ADP, Eth
Modeled in structure PPi AdoMet, PPi AdoMet, PPi AdoEth, PPi
Data collection
Resolution range (Å) 50-2.21 50-2.19 50-2.39 50-2.49
Wavelength (Å) 0.98 0.98 0.98 0.98
Space group P6522 P6522 P6522 P6522
a, b, c (Å) 151.3, 151.3, 221.2 151.6, 151.6, 226.1 150.1, 150.1, 222.6 151.6, 151.6, 226.1
No. of molecules per asymmetric unit 2 2 2 2
Measured reflections 1,478,624 1,541,606 1,854,076 1,101,136
Unique reflections 74,368 78,995 59,745 53,034
R merge 0.118 (0.909) 0.142 (0.918) 0.165 (0.606) 0.184 (0.225)
Completeness 99.61 (96.38) 99.75 (97.50) 100.0 (100.0) 98.31 (82.97)
Redundancy 19.9 (9.2) 19.5 (14.3) 26.0 (22.2) 20.7 (21.0)
Mean I/sigma 14.55 (1.41) 14.94 (3.08) 27.01 (5.14) 11.94 (3.85)
Refinement
Rcryst/Rfreea 0.1990/0.2201 0.1639/0.1888 0.1710/0.1978 0.1595/0.1843
No. of protein atoms 6301 6,356 6,396 6,410
No. of ligand atoms --- 48 43 44
No. of solvent atoms 304 707 596 589
Average B factor (Å2)
    Protein 38.20 31.6 37.5 40.1
    Ligands --- 28.7 30.3 38.2
Ligands RSCCb --- 0.93 0.98 0.96
RMSD from ideal
    Bond length (Å) 0.002 0.007 0.006 0.007
    Bond angles (deg) 0.69 1.33 0.70 0.97
Ramachandran plot (%)
    Favored regions 99 98 98 99
    Outliers 0.25 0.12 0.12 0
PDB ID 4HPV 4L7I 4K0B 4L2Z

Values in parentheses are for the highest resolution shell.

a

Rfree was calculated as Rcryst using 5.0% of randomly selected unique reflections (in thin resolution shells) that were omitted from the structure refinement.

b

RSCC is the real-space correlation to electron density calculated by Phenix.