Table 1.
sMAT | sMAT+AdoMet | sMAT+AdoMet | sMAT+AdoEth | |
---|---|---|---|---|
Added in crystallization | --- | SAM | ADP, Met | ADP, Eth |
Modeled in structure | PPi | AdoMet, PPi | AdoMet, PPi | AdoEth, PPi |
Data collection | ||||
Resolution range (Å) | 50-2.21 | 50-2.19 | 50-2.39 | 50-2.49 |
Wavelength (Å) | 0.98 | 0.98 | 0.98 | 0.98 |
Space group | P6522 | P6522 | P6522 | P6522 |
a, b, c (Å) | 151.3, 151.3, 221.2 | 151.6, 151.6, 226.1 | 150.1, 150.1, 222.6 | 151.6, 151.6, 226.1 |
No. of molecules per asymmetric unit | 2 | 2 | 2 | 2 |
Measured reflections | 1,478,624 | 1,541,606 | 1,854,076 | 1,101,136 |
Unique reflections | 74,368 | 78,995 | 59,745 | 53,034 |
R merge | 0.118 (0.909) | 0.142 (0.918) | 0.165 (0.606) | 0.184 (0.225) |
Completeness | 99.61 (96.38) | 99.75 (97.50) | 100.0 (100.0) | 98.31 (82.97) |
Redundancy | 19.9 (9.2) | 19.5 (14.3) | 26.0 (22.2) | 20.7 (21.0) |
Mean I/sigma | 14.55 (1.41) | 14.94 (3.08) | 27.01 (5.14) | 11.94 (3.85) |
Refinement | ||||
Rcryst/Rfreea | 0.1990/0.2201 | 0.1639/0.1888 | 0.1710/0.1978 | 0.1595/0.1843 |
No. of protein atoms | 6301 | 6,356 | 6,396 | 6,410 |
No. of ligand atoms | --- | 48 | 43 | 44 |
No. of solvent atoms | 304 | 707 | 596 | 589 |
Average B factor (Å2) | ||||
Protein | 38.20 | 31.6 | 37.5 | 40.1 |
Ligands | --- | 28.7 | 30.3 | 38.2 |
Ligands RSCCb | --- | 0.93 | 0.98 | 0.96 |
RMSD from ideal | ||||
Bond length (Å) | 0.002 | 0.007 | 0.006 | 0.007 |
Bond angles (deg) | 0.69 | 1.33 | 0.70 | 0.97 |
Ramachandran plot (%) | ||||
Favored regions | 99 | 98 | 98 | 99 |
Outliers | 0.25 | 0.12 | 0.12 | 0 |
PDB ID | 4HPV | 4L7I | 4K0B | 4L2Z |
Values in parentheses are for the highest resolution shell.
Rfree was calculated as Rcryst using 5.0% of randomly selected unique reflections (in thin resolution shells) that were omitted from the structure refinement.
RSCC is the real-space correlation to electron density calculated by Phenix.