K. pneumoniae
|
|
|
CG43S3 |
CG43 Smr
|
[41]
|
AP001 |
CG43S3ΔiscR
|
This study |
AP002 |
CG43S3iscR
3CA
|
This study |
AP003 |
CG43S3Δfur
|
[42]
|
AP004 |
CG43S3Δfur-ΔiscR
|
This study |
AP005 |
CG43S3Δfur-iscR
3CA
|
This study |
AP006 |
CG43S3ΔlacZ
|
[23]
|
AP007 |
CG43S3ΔlacZ-ΔiscR
|
This study |
AP008 |
CG43S3ΔlacZ-iscR
3CA
|
This study |
AP009 |
CG43S3ΔlacZ-Δfur
|
This study |
AP010 |
CG43S3ΔlacZ-Δfur-ΔryhB
|
This study |
AP011 |
CG43S3ΔlacZ-Δfur-ΔiscR
|
This study |
AP012 |
CG43S3ΔgalU
|
[35]
|
E. coli
|
|
|
DH5α |
supE44ΔlacU169 (f80 lacZΔM15)15)169recA1 endA1 gyrA96 thi-1 relA1
|
[43]
|
BL21(DE3) |
F- ompT hsdSB[rB−mB−]gal dcm [DE3] |
New England Biolabs |
S17-1 λ pir
|
hsdR recA pro RP4-2 [Tc::Mu; Km::Tn7] [λpir] |
[37]
|
Plasmids |
|
|
pKAS46 |
Apr Kmr, positive selection suicide vector, rpsL
|
[36]
|
yT&A |
Apr, TA cloning vector |
Yeastern |
pACYC184 |
TcrCmr, low copy number cloning vector |
New England Biolabs |
pIscR |
Cmr, 980-bp fragment containing an iscR allele cloned into pACYC184 |
This study |
pIscR3CA
|
Cmr, 980-bp fragment containing C92A, C98A and C104A mutant allele of iscR cloned into pACYC184 |
This study |
placZ15 |
Cmr, promoter selection vector, lacZ
+
|
[23]
|
piscRZ15 |
Cmr, 312-bp fragment containing the region upstream of iscR cloned into placZ15 |
This study |
pOrf12 |
Cmr, 500-bp fragment containing the region upstream of Klebsiella K2 cps orf1-orf2 cloned into placZ15
|
[23]
|
pOrf315 |
Cmr, 900-bp fragment containing the region upstream of Klebsiella K2 cps orf3-orf15 cloned into placZ15 |
[23]
|
pOrf1617 |
Cmr, 300-bp fragment containing the region upstream of Klebsiella K2 cps orf16-orf17 cloned into placZ15 |
[23]
|
pET30b-IscR |
Kmr, 654-bp fragment encoding full-length IscR cloned into pET30b |
This study |
pET30b-IscR3CA
|
Kmr, 654-bp fragment encoding full-length C92A, C98A and C104A mutant allele of iscR cloned into pET30b |
This study |
piscR-pKAS46 |
AprKmr, 2.0 kb fragment containing iscR and its flanking regions cloned into pKAS46 |
This study |
piscR3CA-pKAS46 |
AprKmr, 2.0 kb fragment containing full-length C92A, C98A and C104A mutant allele of iscR and its flanking regions cloned into pKAS46 |
This study |