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. 2014 Sep 19;9(9):e107812. doi: 10.1371/journal.pone.0107812

Table 2. Bacterial strains and plasmids used in this study.

Strains or plasmids Descriptions Reference or source
K. pneumoniae
CG43S3 CG43 Smr [41]
AP001 CG43S3ΔiscR This study
AP002 CG43S3iscR 3CA This study
AP003 CG43S3Δfur [42]
AP004 CG43S3ΔfuriscR This study
AP005 CG43S3Δfur-iscR 3CA This study
AP006 CG43S3ΔlacZ [23]
AP007 CG43S3ΔlacZ-ΔiscR This study
AP008 CG43S3ΔlacZ-iscR 3CA This study
AP009 CG43S3ΔlacZ-Δfur This study
AP010 CG43S3ΔlacZfurryhB This study
AP011 CG43S3ΔlacZfuriscR This study
AP012 CG43S3ΔgalU [35]
E. coli
DH5α supE44ΔlacU169 (f80 lacZΔM15)15)169recA1 endA1 gyrA96 thi-1 relA1 [43]
BL21(DE3) F- ompT hsdSB[rBmB]gal dcm [DE3] New England Biolabs
S17-1 λ pir hsdR recA pro RP4-2 [Tc::Mu; Km::Tn7] [λpir] [37]
Plasmids
pKAS46 Apr Kmr, positive selection suicide vector, rpsL [36]
yT&A Apr, TA cloning vector Yeastern
pACYC184 TcrCmr, low copy number cloning vector New England Biolabs
pIscR Cmr, 980-bp fragment containing an iscR allele cloned into pACYC184 This study
pIscR3CA Cmr, 980-bp fragment containing C92A, C98A and C104A mutant allele of iscR cloned into pACYC184 This study
placZ15 Cmr, promoter selection vector, lacZ + [23]
piscRZ15 Cmr, 312-bp fragment containing the region upstream of iscR cloned into placZ15 This study
pOrf12 Cmr, 500-bp fragment containing the region upstream of Klebsiella K2 cps orf1-orf2 cloned into placZ15 [23]
pOrf315 Cmr, 900-bp fragment containing the region upstream of Klebsiella K2 cps orf3-orf15 cloned into placZ15 [23]
pOrf1617 Cmr, 300-bp fragment containing the region upstream of Klebsiella K2 cps orf16-orf17 cloned into placZ15 [23]
pET30b-IscR Kmr, 654-bp fragment encoding full-length IscR cloned into pET30b This study
pET30b-IscR3CA Kmr, 654-bp fragment encoding full-length C92A, C98A and C104A mutant allele of iscR cloned into pET30b This study
piscR-pKAS46 AprKmr, 2.0 kb fragment containing iscR and its flanking regions cloned into pKAS46 This study
piscR3CA-pKAS46 AprKmr, 2.0 kb fragment containing full-length C92A, C98A and C104A mutant allele of iscR and its flanking regions cloned into pKAS46 This study