Table 2.
Annotation of the markers on BTA04 associated with AISC, IFLC, NRRC and ICF in region 2 (39,700,194- 40,890,784 bp)
| Marker | Description | Position (bp) | AISC 1 -log(p-value) | IFLC 1 -log(p-value) | NRRC 1 -log(p-value) | ICF 1 -log(p-value) | Gene name |
|---|---|---|---|---|---|---|---|
| rs43384664 | Non coding exon variant | 39753216 | 2.4605 | 2.8191 | 0.8507 | 0.7718 | |
| rs43383647 | Non coding exon variant | 40067725 | 2.5025 | 2.5839 | 1.8574 | 0.2769 | |
| rs43383646 | Non coding exon variant | 40067763 | 4.3396 | 3.4117 | 2.4495 | 0.7627 | |
| rs43383645 | Non coding exon variant | 40067774 | 2.5029 | 2.5845 | 1.8577 | 0.2770 | |
| rs43383644 | Non coding exon variant | 40067834 | 2.5273 | 2.6006 | 1.8879 | 0.2715 | |
| rs43383643 | Non coding exon variant | 40067978 | 3.9303 | 5.1706 | 1.8290 | 1.7758 | |
| rs109658404 | Non coding exon variant | 40068059 | 2.0745 | 2.0725 | 1.3027 | 0.2634 | |
| rs43383637 | Non coding exon variant | 40068666 | 3.9227 | 5.1547 | 1.8272 | 1.7656 | |
| rs43383636 | Non coding exon variant | 40068699 | 3.9227 | 5.1547 | 1.8272 | 1.7656 | |
| rs109959240 | Non coding exon variant | 40068766 | 2.1516 | 2.1473 | 1.3416 | 0.2780 | |
| rs136871729 | Non coding exon variant | 40068903 | 2.1559 | 2.1552 | 1.345 | 0.2807 | |
| 40322885C/A | Synonymous variant | 40322885 | 2.7487 | 4.1129 | 0.2773 | 4.5324 | SEMA3C |
| 40438940A/G | Missense variant | 40438940 | 1.4299 | 1.2607 | 0.4097 | 0.3905 | UP |
| rs136410227 | Synonymous variant | 40455017 | 6.7135 | 7.3694 | 2.8445 | 2.6552 | |
| 40585702G/A | Synonymous variant | 40585702 | 12.8399 | 14.0147 | 5.3021 | 5.3908 | CD36 |
| 40599222G/A | Synonymous variant | 40599222 | 13.1476 | 14.2355 | 5.4904 | 5.3956 | CD36 |
| 40614608C/T | Missense variant | 40614608 | 13.2259 | 14.2777 | 5.5281 | 5.3700 | CD36 |
| 40614675G/A | 5 prime UTR variant | 40614675 | 13.2255 | 14.2828 | 5.5249 | 5.3764 | CD36 |
| 40807452A/G | Missense variant | 40807452 | 9.2722 | 8.5549 | 4.1428 | 2.0438 | GNAT3 |
| rs110078696 | Synonymous variant | 40807576 | 9.358 | 8.6351 | 4.2066 | 2.0567 | GNAT3 |
| rs109903966 | Synonymous variant | 40807594 | 9.3572 | 8.6346 | 4.2061 | 2.0566 | GNAT3 |
| rs108969608 | Synonymous variant | 40813977 | 9.4276 | 8.7599 | 4.2175 | 2.1207 | GNAT3 |
1AISC: Number of inseminations per conception; IFLC: days from first to last insemination; NRRC: 56-day non-return rate; ICF: the length in days of the interval from calving to first insemination.