Table 2. SNP genotyped, their location within the gene, position within galGal version 4, nucleotide change, and codon affected, and the MX protein domain involved.

SNP	Location	GGA1 bp	nt change1	Codon	AA	Domain3	Ref
MxP-2242	Promoter	108,275,357	G>C	-	-	-	[24], [36]
MxP-158	Promoter	108,275,433	A>T	-	-	-	[36]
MxP-142	Promoter	108,275,449	C>G	-	-	-	[36]
MxP-136	Promoter	108,275,455	C>T	-	-	-	[36]
MxP-55	Promoter	108,275,536	G>A	-	-	-	[36]
MxP-18	Promoter	108,275,573	T>C	-	-	-	[36]
Mx5U322	Exon 1	108,275,623	A>C	-	-	-	[24], [36]
Mx5U422	Exon 1	108,275,633	T>C	-	-	-	[24], [36]
Mx5U100	Exon 2	108,280,332	A>C	-	-	-	[24]
Mx5U104	Exon 2	108,280,336	A>G	-	-	-	[24], [36]
Mx5U117	Exon 2	108,280,349	A>T	-	-	-
Mx5U118	Exon 2	108,280,350	G>A	-	-	-	[24]
MxCDS13	Exon 2	108,280,385	C>T	CGG>TGG	R5W	ND	[5], [13]
MxCDS62	Exon 2	108,280,434	G>A	CGG>CAG	R21Q	ND	[5], [8], [10], [13]
MxCDS122	Exon 2	108,280,494	C>G	CCA>CGA	P41R	ND	[5], [8], [10], [13]
MxCDS125	Exon 2	108,280,497	T>C	TTA>TCA	L42S	ND	[5], [8], [10], [13]
MxCDS156	Exon 2	108,280,528	T>A	GCT>GCA	A52A	ND	[5], [8], [10]
MxCDS254*	Exon 3	108,282,234	T>C	TTG>TCG	L85S	ND	[5]
MxCDS281	Exon 3	108,282,261	G>A	CGA>CAA	R94Q	BSE1	[5], [10]
MxCDS351	Exon 3	108,282,331	T>C	ATT>ATC	I117I	G-domain	[5], [8]
MxCDS554*	Exon 4	108,283,451	A>G	AAA>AGA	K185R	G-domain	[5], [13]
MxCDS595*	Exon 5	108,285,185	G>A	GGT>AGT	G199S	G-domain	[5], [13]
MxCDS605	Exon 5	108,285,194	G>C	AGT>ACT	S202T	G-domain	[5], [8], [13]
MxCDS694	Exon 5	108,285,283	G>A	GGG>AGG	G232R	G-domain	[5]
MxCDS696	Exon 5	108,285,285	G>C	GGG>GGC	G232G	G-domain	[5], [8], [13]
MxCDS792	Exon 6	108,286,581	T>C	AAT>AAC	N264N	G-domain	[5], [10]
MxCDS813	Exon 6	108,286,602	A>G	GAA>GAG	E271E	G-domain	[5], [10], [13]
MxCDS922	Exon 7	108,287,175	G>A	GTA>ATA	V308I	G-domain	[5], [8], [10], [13]
MxCDS1015	Exon 7	108,287,268	A>G	ACA>GCA	T339A	G-domain	[5], [8], [10], [13]
MxCDS1203*	Exon 9	108,289,299	A>C>G	CTA>CTC>CTG	L401L	BSE2	[3], [5], [8]
MxCDS1248	Exon 9	108,289,344	A>G	ACA>ACG	T416T	MD	[5], [8]
MxCDS1329	Exon 10	108,289,898	C>T	AAC>AAT	N443N	MD	[5]
MxCDS1455	Exon 11	108,290,956	C>T	CGC>CGT	R485R	MD	[5], [8]
MxCDS1545	Exon 11	108,291,046	G>A	GCG>GCA	A515A	MD	[5], [8], [10]
MxCDS1643	Exon 13	108,293,825	C>T	GCC>GTC	A548V	MD	[5], [8], [13]
MxCDS1747	Exon 13	108,293,929	A>G	ACA>GCA	T583A	MD/GED	[5], [10], [13]
MxCDS1801	Exon 13	108,293,983	A>C	AAA>CAA	K601Q	MD/GED
MxCDS1892	Exon 14	108,295,901	G>A	AGT>AAT	S631N	GED	[5], [8], [13]
MxCDS1905	Exon 14	108,295,914	C>A	AGC>AGA	S635R	GED
MxCDS2019	Exon 14	108,296,028	G>A	CAG>CAA	Q673Q	Hinge1	[5], [8]

¹galGal4 > variant.

²Denotes SNP that were reported in the literature, but were not genotyped in the elite lines. Examination of the resequence data indicates that all haplotypes had the variant allele at these SNP.

³Mx protein domain; ND  =  domain not determined, BSE  =  bundle signaling element, G-domain  =  GTPase domain, MD  =  Middle domain, GED  =  GTPase effector domain, MD/GED  =  transition region between MD and GED, Hinge  =  protine hinge region.

*Denotes SNP previously reported in the literature and found not segregating in the elite lines.