Table 3. Mx haplotypes identified in the 9 elite lines as determined by 6 promoter, and 34 exon SNP.
| Haplotype | MxP-2241 | MxP-158 | MxP-142 | MxP-136 | MxP-55 | MxP-18 | Mx5U321 | Mx5U421 | Mx5U100 | Mx5U104 | Mx5U117 | Mx5U118 | MxCDS13 | MxCDS62 | MxCDS122 | MxCDS125 | MxCDS156 | MxCDS254* | MxCDS281 | MxCDS351 | MxCDS554* | MxCDS595* | MxCDS605 | MxCDS694 | MxCDS696 | MxCDS792 | MxCDS813 | MxCDS922 | MxCDS1015 | MxCDS1203* | MxCDS1248 | MxCDS1329 | MxCDS1455 | MxCDS1545 | MxCDS1643 | MxCDS1747 | MxCDS1801 | MxCDS1892 | MxCDS1905 | MxCDS2019 |
| galGal4 | G | A | C | C | G | T | A | T | A | A | A | G | C | G | C | T | T | T | G | T | A | G | G | G | G | T | A | G | A | A | A | C | C | G | C | A | A | G | C | G |
| Mx-H01 | C | A | C | C | G | T | C | C | A | G | T | G | C | A | C | T | A | T | G | C | A | G | G | G | G | T | A | A | G | A | A | C | T | A | C | A | A | G | C | G |
| Mx-H02 | C | A | C | C | G | T | C | C | A | G | T | G | C | A | C | T | A | T | G | C | A | G | G | G | G | T | A | G | A | A | A | C | T | A | T | A | A | A | C | G |
| Mx-H03 | C | A | C | T | G | T | C | C | A | G | A | G | C | A | C | T | T | T | G | T | A | G | C | G | G | T | A | A | G | A | A | T | C | G | C | A | A | G | C | G |
| Mx-H04 | C | T | G | C | A | C | C | C | A | G | A | G | C | A | G | C | A | T | G | C | A | G | G | G | G | T | A | G | A | A | G | C | T | A | C | A | A | G | C | G |
| Mx-H05 | C | A | C | C | G | T | C | C | A | G | A | G | C | A | G | C | A | T | G | T | A | G | G | G | G | T | A | G | A | A | A | C | T | A | T | A | A | A | C | G |
| Mx-H06 | C | A | C | C | G | T | C | C | A | A | A | G | C | G | C | T | T | T | G | C | A | G | G | G | G | T | A | G | A | A | G | C | T | A | T | A | A | A | C | A |
| Mx-H07 | C | A | C | C | G | T | C | C | A | A | A | G | C | G | C | T | T | T | G | C | A | G | G | G | G | T | A | G | A | A | G | T | C | G | C | A | A | G | C | G |
| Mx-H08 | C | A | C | C | G | T | C | C | A | A | A | G | C | G | C | T | T | T | G | T | A | G | G | A | G | T | A | G | A | A | G | C | T | A | T | A | A | A | C | A |
| Mx-H09 | C | A | C | C | G | T | C | C | A | A | A | G | C | G | C | T | T | T | G | T | A | G | G | G | G | T | A | G | A | A | A | C | C | G | C | A | C | G | C | G |
| Mx-H10 | C | A | C | C | G | T | C | C | A | A | A | G | C | G | C | T | T | T | G | T | A | G | G | G | C | T | A | G | A | A | G | C | C | G | C | A | A | A | C | G |
| Mx-H11 | C | A | C | T | G | C | C | C | C | G | A | A | T | A | G | C | A | T | A | T | A | G | G | G | G | C | G | A | G | A | G | C | C | G | C | G | A | G | A | G |
| Mx-H12 | C | A | C | C | G | T | C | C | A | A | A | G | C | G | C | T | T | T | G | T | A | G | G | A | G | T | A | G | A | A | G | C | T | A | C | A | A | G | C | G |
1
Denotes SNP that were not tested within the elite lines, not segregating in the elite lines.
MxP-# denotes SNP in the promoter regions 400 bp upstream of RNA transcription initiation which includes the Mx ISRE. Numbers indicates nt position upstream of RNA initiation.
Mx5U# denotes SNP in the 5′ untranslated region. Number indicates nt position within the mRNA transcript.
MxCDS# denotes SNP in the coding region of Mx. Number indicates nt position from the beginning of the start codon.
*Denotes SNP not found within the 9 elite lines examined in this study but have been previously been reported.