Table 2.

Summary of QTLs detected in Linkage Analyses studies

OAR	Trait	Signifi-cance 1	Level	Position 2(Mb)	Confidence Interval	Average QTL Effect 3
5	FACTOR1	**	CW	93.8	92.0 - 95.3	0.26
5	ISO_HBLEAT	**	CW	96.8	92.8 – 97.3	0.22
5	CT1-HBLEAT	*	GW	93.7	92.0 – 95.4	0.25
5	IBT-HBLEAT	*	GW	52.6	47.0 – 55.0	0.22
6	FACTOR2	**	CW	111.7	111.6 - 111.8	0.22
10	AT2-LOCOM	**	CW	16.1	14.2 – 17.8	0.20
12	FACTOR4	*	CW	69.0	63.7 - 71.1	0.20
12	ISO_LBLEAT	*	GW	67.8	65.6 – 70.9	0.22
12	AT1-LBLEAT	*	CW	70.4	66.4 – 71.2	0.27
12	CT1-LBLEAT	**	CW	27.5 (68.4) (68.4)	26.1 – 29.1	0.21
12	CT2-DIST	*	CW	33.1	29.7 – 39.4	0.23
13	FACTOR1	*	CW	41.4	37.1 - 43.1	0.16
13	ISO_HBLEAT	*	CW	39.7	37.5 – 43.9	0.22
13	CT1-HBLEAT	**	GW	41.4	40.5 – 44.0	0.27
16	FACTOR1	***	GW	45.2	41.9 - 48.1	0.24
16	ISO_HBLEAT	**	CW	43.7	41.3 – 49.8	0.24
16	AT1-HBLEAT	*	CW	47.7	39.5 – 49.8	0.21
16	AT2-HBLEAT	***	GW	45.1	41.7 – 46.6	0.30
16	IBT-HBLEAT	*	CW	45.8	42.2 – 48.8	0.25
16	CT2-DIST	**	CW	34.4 (48.0)	33.0 – 36.8	0.24
17	CT1-HBLEAT	**	CW	39.0	35.1 – 42.3	0.19
17	ISO_LBLEAT	*	GW	33.3	30.5 – 36.8	0.26
17	IBT-LOCOM	*	CW	66.4	64.7 – 72.0	0.21
19	CORT	*	CW	41.0	38.9 – 43.2	0.27
20	IBT-LOCOM	**	CW	38.3	36.9 – 43.2	0.26
21	FACTOR4	***	GW	47.6	45.9 - 48.5	0.27
21	AT2-HBLEAT	*	CW	36.0	14.7 – 37.1	0.19
21	ISO_LBLEAT	**	GW	39.3	38.1 – 40.0	0.26
21	AT1-LBLEAT	**	CW	39.3	37.9 – 41.6	0.22
21	CT1-LBLEAT	*	GW	47.3	46.5 – 48.4	0.26
24	CT1-LBLEAT	**	CW	9.8	9.1 – 11.7	0.19
26	FACTOR2	*	CW	42.45	41.9 - 44.7	0.21

Only the significant QTLs reaching the 1% chromosome-wise threshold or the genome-wise thresholds are listed in the table. QTLs reaching the 5% chromosome-wise threshold are also reported if the QTL was also detected for the same trait by association analysis (GWAS). ¹: *, p < 5%; **, p < 1%; ***, p < 0.1%. ²: the position of a second significant QTL is indicated between parentheses. ³: average QTL effect given in phenotypic standard deviation. CW, Chromosome Wide; GW, Genome Wide.