Table 4.

Clades and super-clades, showing identical content between Neighbor-Joining (NJ) and Maximum Parsimony (MP) phylogenies; and including functional homologues among non Triticeae species.

Clades / superclades with identical content		Member(s) among reference CNLs
NJ	MP
1	65	> gi|15236112|ref|NP_194339.1|disease resistance protein RPS2 [Arabidopsis thaliana]
		> gi 15221252 ref NP_172686.1 disease resistance protein RPS5 [Arabidopsis thaliana]
3	89	> gi|152060786|gb|ABS29034.1|Lr1 disease resistance protein [Triticum aestivum]
13	77+78	> gi|22252946|gb|AAM94164.1|go35 NBS-LRR [Aegilops tauschii]
		> gi|5702196|gb|AAD47197.1 |F107293_1 rust resistance protein [Zea mays]
15	75	> gi|37624724|gb|AAQ96158.1|powdery mildew resistance protein Pm3b [Triticum aestivum]
24	19+20+21	> gi|225030802|gb|ACN79514.1|resistance protein Pid3 [Oryza sativa Japonica Group]
37	50	> gi|85682844|gb|ABC73398.1|Piz-t [Oryza sativa Japonica Group]
38+39	25+26+27	> gi|33302327|gb|AAQ01784.1|resistance protein Lr10 [Triticum aestivum]
50	31	> gi|114329518|gb|ABI64281.1|CC-NBS-LRR Pi36 [Oryza sativa Indica Group]