Table 2. Composition and concentrations used in the reactions of the molecular study of V. cholerae strains isolated from water and sediments collected in four estuaries in Ceará, Brazil, between January and April 2009.
Reagents of the reaction* | PCR | Multiplex PCR | |||
---|---|---|---|---|---|
Species-specific gene | Virulence genes | ||||
ompW | ctxAB | tcp | rfbO1 | zot | |
Buffer 10X | 20 mM Tris pH 8.4, 50 mM KCl | 20 mM Tris pH 8.4, 50 mM KCl | |||
dNTP's (2.5 mM) | 0.25 µM | 0.25 µM | |||
Primer F (10 µM) | 0.4 µM | 0.4 µM | 0.4 µM | 0.4 µM | 0.4 µM |
Primer R (10 µM) | 0.4 µM | 0.4 µM | 0.4 µM | 0.4 µM | 0.4 µM |
MgCl2 (50 mM) | 1.5 mM | 1.5 mM | |||
Taq polymerase (500 U) | 4 U | 4 U | |||
Sample | 20-35 ng** | 20-35 ng** | |||
Final reaction volume | 25 µL | 25 µL |
= water q.s. was added to each reaction;
= sample concentration varied from 20 to 25 ng.