Table 2.
Description of the different libraries generated in this study.
| Samples | Samples | 16S rDNA Reads #/% | pmoA Reads #/% | 454** Reads #/% |
|---|---|---|---|---|
| Bacteria | AT II-I | 16104/96.9 | 59/100 | 119158/19.7 |
| DD-I | 13376/81.3 | NA | 115943/17.6 | |
| KB-U | 8069/58 | 80/100 | 707139/49.9 | |
| KB-L | 9942/73.5 | NA | 451616/32.9 | |
| Total | AT II-I | 16618 | 59 | 604000 |
| DD-I | 16457 | NA | 658619 | |
| KB-U | 13904 | 80 | 1417636 | |
| KB-L | 13523 | NA | 1370213 | |
| Unknown* | AT II-I | 4/0.02 | NA | 23299/3.9 |
| DD-I | 755/4.6 | NA | 27301/4.1 | |
| KB-U | 689/4.9 | NA | 120459/8.5 | |
| KB-L | 501/3.7 | NA | 79137/5.8 |
*
Unknown represents the number of reads not assigned to any known Taxa.
NA, Not Available.
**
The table presents only reads assigned to a bacterial origin (including unknown). The 454 archaeal, eukaryotic and reads showing no hits to public databases are not presented and represent the remaining percentage of reads.