Table 2.
Summary of topologies and nodes supports obtained with the Hes superfamily partial dataset analyses
|
Node names |
Node descriptions |
Partial dataset |
Comments |
||||
|---|---|---|---|---|---|---|---|
| ML - aLRT | ML - bootstrap | Bayes - PP | ML - aLRT | ML - bootstrap | Bayes - PP | ||
|
A |
Hes + Dec + Hey + Stich + Helt |
0,99 |
96 |
1 |
2 sequences are not included in any family : |
2 sequences are not included in any family : |
Oca_10158 is included in |
| |
|
|
|
|
sko_273877 and Bfl_109346 |
sko_273877 and Bfl_109346 |
no family |
|
B |
Hes |
0,89 |
32 |
0,97 |
|
|
|
|
C |
Hey |
0,86 |
44 |
0,97 |
|
|
sko_273877 and Bfl_109346 |
| |
|
|
|
|
|
|
are included in Hey |
|
D |
Helt |
0,72 |
28 |
0,95 |
|
|
Oca_10158 is outside Helt |
|
E |
Stich |
1 |
96 |
0,99 |
|
|
|
|
F |
DEC |
0,87 |
60 |
0,92 |
|
|
|
|
G |
E(Spl) |
0,8 |
4 |
0,8 |
Dme-M8 and Dme_M5 are not included |
Dme-M8 and Dme_M5 are not included |
Dme-M8 and Dme_M5 are included |
|
H |
Cnidarian Hes |
0,69 |
55 |
0,69 |
8 sequences |
8 sequences |
8 sequences |
|
I |
Lophotrochozoan Hes group 1 |
0,9 |
1 |
_ |
13 sequences |
13 sequences |
Not found |
|
J |
Lophotrochozoan Hes group 2 |
0,92 |
6 |
0,78 |
6 sequences + Spu-15712 |
6 sequences + Spu-15712 |
5 sequences + Spu-15712 |
|
K |
Ecdysozoan Hes group 1 |
0,93 |
1 |
_ |
12 sequences including Dme_Hairy, side and dpn |
12 sequences including Dme_Hairy, side and dpn |
Not found |
|
L |
Deuterostomian Hes group 1 |
0,97 |
58 |
0,98 |
4 sequences of Danio and Homo |
4 sequences of Danio and Homo |
4 sequences of Danio and Homo |
|
M |
Hes subgroup |
0,91 |
0 |
_ |
48 sequences including Lophotrochozoan Hes |
48 sequences including Lophotrochozoan Hes |
Not found |
| |
|
|
|
|
groups 1 and 2, Ecdysozoan Hes group 1, |
groups 1 and 2, Ecdysozoan Hes group 1, |
|
| |
|
|
|
|
Cnidarian Hes and Deuterostomian Hes group 1 |
Cnidarian Hes and Deuterostomian Hes group 1 |
|
| R | Hes subgroup 2 | 0,76 | 1 | _ | 39 sequences including E(spl) | 39 sequences including E(spl) | Not found |
Hes/Hey-related genes partial dataset was analyzed both with maximum likelihood (ML) and Bayesian algorithms. Node supports were tested by approximate likelihood ratio test (aLRT) (0 to 1) and bootstraps (0 to 100) for ML, and with posterior probabilities (PP, 0-1) for Bayes; results were provided in this table. Node names and descriptions correspond to the nodes of Figure 3. Comments on clade for all analyses are provided, when relevant.