Table 2.
M. abscessus HGT cases
| Putative HGT | Homology | Parent species | Recipient species | Donor species | Nb duplications before parent |
|---|---|---|---|---|---|
| 1 |
PHAGE_Mycoba_Peaches-gi|282598664|ref|YP_003358761.1|gp58[Mycobacterium_phage_Peaches] |
[M93] |
[6G-0125-R] |
[M93] |
5 |
| 2 |
PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD] |
[PSEUDO ~ −5S-0421] |
[M94] |
[M93 M115] |
4 |
| 3 |
PHAGE_Mycoba_LeBron-gi|304360967|ref|YP_003857149.1|gp18[Mycobacterium_phage_LeBron] |
[M115] |
[M172] |
[M115] |
2 |
| 4 |
PHAGE_Mycoba_Giles-gi|160700672|ref|YP_001552352.1|gp23[Mycobacterium_phage_Giles] |
[M94] |
[6G-0728-R] |
[M94] |
5 |
| 5 |
PHAGE_Mycoba_Che9c-gi|29566118|ref|NP_817687.1|gp10[Mycobacterium_phage_Che9c] |
[M18] |
[3A-0122_S] |
[M18] |
2 |
| 6 |
PHAGE_Mycoba_Pukovnik-gi|192824238|ref|YP_001994879.1|gp62[Mycobacterium_phage_Pukovnik] |
[M154] |
[M115] |
[M154] |
5 |
| 7 |
PHAGE_Tricho_2c-gi|116326757|ref|YP_803294.1|hypotheticalproteinTNAV2c_gp071[Trichoplusia_ni_ascovirus_2c] |
[5S-0921] |
[4S-0726] |
[5S-0921] |
4 |
| 8 |
PHAGE_Salmon_PVP_SE1-gi|363539742|ref|YP_004894027.1|hypotheticalprotein[SalmonellaphagePVP-SE1] |
[M. massiliense T] |
[M24] |
[M. massiliense T] |
5 |
| 9 |
PHAGE_Rhodoc_REQ3-gi|372449972|ref|YP_005087193.1|phageintegrase[RhodococcusphageREQ3] |
[M172] |
[3A_0930_S] |
[M172] |
3 |
| 10 |
PHAGE_Salmon_PVP_SE1-gi|363539618|ref|YP_004893903.1|phosphoribosylpyrophosphatesynthetase[SalmonellaphagePVP-SE1] |
[3A-0122_S1] |
[M. massiliense T] |
[3A-0122_S1] |
5 |
| 11 |
PHAGE_Mycoba_Myrna-gi|203454746|ref|YP_002225062.1|gp183[Mycobacterium_phage_Myrna] |
[M172] |
[M94] |
[M172] |
5 |
| 12 |
PHAGE_Mycoba_Omega-gi|29566822|ref|NP_818386.1|gp85[Mycobacterium_phage_Omega] |
[M115] |
[M24] |
[M115] |
5 |
| 13 |
PHAGE_Mycoba_Pacc40-gi|206600097|ref|YP_002241602.1|gp18[Mycobacterium_phage_Pacc40] |
[M24] |
[M94] |
[M24] |
6 |
| 14 |
PHAGE_Mycoba_Pacc40-gi|206600097|ref|YP_002241602.1|gp18[Mycobacterium_phage_Pacc40] |
[PSEUDO ~ − M159] |
[M24] |
[M172 3A-0122_S6 3A-0122_S2 3A-0122_S4 47 J26] |
1 |
| 15 |
PHAGE_Acanth_mimivirus-gi|311977570|ref|YP_003986690.1|DNAtopoisomerase1b[Acanthamoebapolyphagamimivirus] |
[3A-0122_S7] |
[3A-0122_S5] |
[3A-0122_S7] |
2 |
| 16 |
PHAGE_Rhodoc_RER2-gi|372449922|ref|YP_005087145.1|hypotheticalprotein[RhodococcusphageRER2] |
[M24] |
[3A-0731] |
[M24] |
3 |
| 17 |
PHAGE_Aeromo_31-gi|66391812|ref|YP_238737.1|hypotheticalproteinPHG31p8[Aeromonas_phage_31] |
[4S-0726] |
[4S-0303] |
[4S-0726] |
6 |
| 18 |
PHAGE_Lactoc_P087-gi|229605000|ref|YP_002875699.1|putativecysteinesynthase[Lactococcus_phage_P087] |
[47 J26] |
[5S-0708] |
[47 J26] |
6 |
| 19 |
PHAGE_Mycoba_Myrna-gi|203454746|ref|YP_002225062.1|gp183[Mycobacterium_phage_Myrna] |
[M172] |
[M94] |
[M172] |
5 |
| 20 |
PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD] |
[3A-0122_S5] |
[M94] |
[3A-0122_S5] |
2 |
| 21 |
PHAGE_Acanth_mimivirus-gi|311977513|ref|YP_003986633.1|putativedTDP-D-glucose4,6-dehydratase[Acanthamoebapolyphagamimivirus] |
[3A-0122_S4] |
[4S-0726-RA] |
[3A-0122_S4] |
4 |
| 22 |
PHAGE_Bacill_36-gi|156564011|ref|YP_001429750.1|PcrAhelicase[Bacillus_phage_0305phi8_36] |
[3A-0122_S7] |
[3A-0119-R] |
[3A-0122_S7] |
3 |
| 23 |
PHAGE_Mycoba_Che9c-gi|29566174|ref|NP_817745.1|gp68[Mycobacterium_phage_Che9c] |
[M18] |
[M94] |
[M18] |
3 |
| 24 |
PHAGE_Mycoba_Che8-gi|29565783|ref|NP_817355.1|gp17[Mycobacterium_phage_Che8] |
[M24] |
[M172 3A-0122_S4 3A-0122_S2 47 J26] |
[M24] |
2 |
| 25 |
PHAGE_Tricho_2c-gi|116326757|ref|YP_803294.1|hypotheticalproteinTNAV2c_gp071[Trichoplusia_ni_ascovirus_2c] |
[M115] |
[4S-0116_S] |
[M115] |
3 |
| 26 |
PHAGE_Microm_MpV1-gi|313768434|ref|YP_004062114.1|hypotheticalprotein[Micromonassp.RCC1109virusMpV1] |
[M115] |
[M94] |
[M115] |
3 |
| 27 |
PHAGE_Mycoba_Pipefish-gi|109521870|ref|YP_655307.1|gp30[Mycobacterium_phage_Pipefish] |
[M18] |
[M172] |
[M18] |
1 |
| 28 |
PHAGE_Plankt_PaV_LD-gi|371496158|ref|YP_004957306.1|ABCtransporter[PlanktothrixphagePaV-LD] |
[M. bolletii T] |
[4S-0726-RA] |
[M. bolletii T] |
7 |
| 29 |
PHAGE_Lactoc_P087-gi|229605000|ref|YP_002875699.1|putativecysteinesynthase [Lactococcus_phage_P087] |
[M24] |
[M. bolletii T] |
[M24] |
7 |
| 30 |
PHAGE_Mycoba_Omega-gi|29566768|ref|NP_818332.1|gp31[Mycobacterium_phage_Omega] |
[M94] |
[6G-1108] |
[M94] |
3 |
| 31 |
PHAGE_Burkho_phi1026b-gi|38707948|ref|NP_945089.1|gp58[Burkholderia_phage_phi1026b] |
[PSEUDO ~ −M154] |
[M. bolletii T] |
[M. massiliense T M154 M172 M159] |
6 |
| 32 |
PHAGE_Mycoba_Cjw1-gi|29565933|ref|NP_817504.1|gp55[Mycobacterium_phage_Cjw1] |
[PSEUDO ~ −M159] |
[M. bolletii T] |
[M172 3A-0122_S0 1S-152-0930 3A-0122_S1] |
2 |
| 33 | PHAGE_Brocho_BL3-gi|327409421|ref|YP_004301563.1|gp29[BrochothrixphageBL3] | [M115] | [M24] | [M115] | 5 |