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. 2014 Sep 23;9(9):e108022. doi: 10.1371/journal.pone.0108022

Table 1. Comparetive binding parameters for the interaction of harmalol with polynucleotides in 15 mM CP buffer at 25±0.5°C obtained from spectrophotometric and spectrofluorimetric studiesa.

Polynucleotides Spectrophotometry (analysis by McGhee-von Hippel) Spectrofluorimetry φ/φo b Thermal melting ΔTm (°C)
Binding constant Ki (×106 M−1) n Cooperativity factor (ω) Kiω (×106M−1) Binding mode Hypochromic effect (%); bathochromic shift (nm)
poly(dA-dT).poly(dA-dT) 0.43±0.03 0.18 - - Non cooperative 33%; 6 nm 1.43 8
poly(dA).poly(dT) 0.02±0.01 0.12 14.0 0.28±0.01 cooperative 21.88%; 4 nm 1.20 6
poly(dG-dC).poly(dG-dC) 4.20±0.05 0.33 - - Non cooperative 44%; 13 nm 0.20 ND
poly(dG).poly(dC) 0.002±0.001 0.08 84 0.18±0.01 cooperative 31.36%; 5 nm 0.56 6

ND; not determined.

a

Data presented from the average of four determinations in each. Denotes the relative quantum yield value at saturation of nucleotide/alkaloid molar ratio determined as described (ref). ΔTm °C is calculated [Tm of complex - Tm of duplex polynucleotide] at rmax.