Table 1. Comparetive binding parameters for the interaction of harmalol with polynucleotides in 15 mM CP buffer at 25±0.5°C obtained from spectrophotometric and spectrofluorimetric studiesa.
Polynucleotides | Spectrophotometry (analysis by McGhee-von Hippel) | Spectrofluorimetry φ/φo b | Thermal melting ΔTm (°C) | |||||
Binding constant Ki (×106 M−1) | n | Cooperativity factor (ω) | Kiω (×106M−1) | Binding mode | Hypochromic effect (%); bathochromic shift (nm) | |||
poly(dA-dT).poly(dA-dT) | 0.43±0.03 | 0.18 | - | - | Non cooperative | 33%; 6 nm | 1.43 | 8 |
poly(dA).poly(dT) | 0.02±0.01 | 0.12 | 14.0 | 0.28±0.01 | cooperative | 21.88%; 4 nm | 1.20 | 6 |
poly(dG-dC).poly(dG-dC) | 4.20±0.05 | 0.33 | - | - | Non cooperative | 44%; 13 nm | 0.20 | ND |
poly(dG).poly(dC) | 0.002±0.001 | 0.08 | 84 | 0.18±0.01 | cooperative | 31.36%; 5 nm | 0.56 | 6 |
ND; not determined.
Data presented from the average of four determinations in each. Denotes the relative quantum yield value at saturation of nucleotide/alkaloid molar ratio determined as described (ref). ΔTm °C is calculated [Tm of complex - Tm of duplex polynucleotide] at rmax.