Table 1.

Annotation of Glycine max WRKY transcription factors (Choromosome 1 to 3)

Chr	Gene ID a	Name b	Alternative transcripts	CDS (pb)	Protein (aa)	Groups c	Expression	Soybase	Domain modifications
	(Phytozome)						Confirmed d	EST ID
1	Glyma01g05050	GmWRKY3	1	1530	510	IIb	+	-
1	Glyma01g06550	GmWRKY9	1	1368	456	I	+	EU019557.1
1	Glyma01g06870	GmWRKY28	2	894	298	IIc	+	CA938308.1
1	Glyma01g31921	GmWRKY5	2	1524	508	I	+	EU019554.1	WRKYGQK → WRKYGEK (N-terminal)
1	Glyma01g39600	GmWRKY35	2	966	322	IId	+	BG651351.1
1	Glyma01g43130	GmWRKY65	1	738	246	IIe	+	-	CX(N)CX(N)HXH/C → CX(N)CX(N)HXD
1	Glyma01g43420	GmWRKY12	1	969	323	III	+	EU019558.1
2	Glyma02g01031	GmWRKY66	1	1455	485	IIb	-	-
2	Glyma02g01420	GmWRKY67	1	963	321	IIc	+	BT096212.1
2	Glyma02g02430*	GmWRKY68	2	1443	481	IIb	-	-
2	Glyma02g12490	GmWRKY69	1	1368	456	I	+	FK022538.1
2	Glyma02g12830	GmWRKY32	1	882	294	IIc	+	BM527576.1
2	Glyma02g15920	GmWRKY22	4	1068	355	IId	+	AK244154.1
2	Glyma02g36510	GmWRKY70	1	1518	506	I	+	FG988660.1
2	Glyma02g39870	GmWRKY39	1	1743	581	I	+	BM188894.1
2	Glyma02g45530	GmWRKY71	1	1014	338	IIc	+	BE020472.1
2	Glyma02g46280	GmWRKY72	2	1206	402	IIb	-	-
2	Glyma02g46690	GmWRKY73	2	1767	589	I	+	BG789786.1
2	Glyma02g47650	GmWRKY74	1	1524	508	I	+	CO984087.1
3	Glyma03g00460	GmWRKY75	1	816	272	III	+	BT095645.1
3	Glyma03g05220	GmWRKY76	1	1524	508	I	+	EV272592.1	WRKYGQK → WRKYGEK (N-terminal)
3	Glyma03g25770	GmWRKY77	1	717	239	IIc	+	EV274902.1
3	Glyma03g31630	GmWRKY15	2	1026	342	IId	+	CD397604.1
3	Glyma03g33376	GmWRKY29	2	1347	449	I	+	EU019569.1
3	Glyma03g37870	GmWRKY41	1	762	254	IIe	+	EU019577.1
3	Glyma03g37940	GmWRKY51	1	864	288	IIc	+	BT098285.1
3	Glyma03g38360	GmWRKY78	2	1626	542	IIb	+	DB956313.1
3	Glyma03g41750	GmWRKY43	1	1089	363	III	+	EU019579.1

^aReannotated genes with original sequences containing wrong start\stop codons are marked with (*).

^bThe names GmWRKY1-64 are given according to Zhou et al. [38]; GmWRKY65-182 are given according to the chromosome order.

^cThe classification according to Eugelm et al. [24].

^dThe expression confirmation according to SoyBase ESTs, RNA-Seq analysis (in silico analysis) and RNA-Seq of ASR lesion microdissection (experimental analysis).