Table 1.
Similarity analysis and nucleotides different among 16S rRNA genes using PHYDIT program.
| Aeromonas | Vibrio sp. | E. coli EDL 933 W | E. coli Sakai | E. coli ATCC 43894 | E. coli O111:H— | E. coli O104:H4 | E. coli O121:H19 | E. coli SM25(1)∗ | E. coli KL48(2)∗ | Shigella sonnei | Streptomyces sp. | Bacillus sp. | E. coli O26:H11 | Shigella dysenteriae | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Aeromonas | — | 158/1500 | 151/1376 | 151/1376 | 150/1376 | 154/1503 | 149/1375 | 153/1529 | 147/1376 | 148/1376 | 161/1529 | 329/1445 | 357/1377 | 817/1451 | 817/1451 |
| Vibrio sp. | 89.47 | — | 131/1380 | 131/1380 | 130/1380 | 134/1501 | 141/1379 | 146/1506 | 140/1380 | 138/1380 | 252/1642 | 326/1418 | 458/1528 | 810/1429 | 809/1429 |
| E. coli EDL 933 W | 89.03 | 90.51 | — | 0/1380 | 1/1380 | 6/1380 | 19/1379 | 13/1379 | 12/1380 | 9/1380 | 16/1380 | 282/1346 | 305/1325 | 739/1340 | 741/1340 |
| E. coli Sakai | 89.03 | 90.51 | 100.00 | — | 1/1380 | 6/1380 | 19/1379 | 13/1379 | 12/1380 | 9/1380 | 16/1380 | 282/1346 | 305/1325 | 739/1340 | 741/1340 |
| E. coli ATCC 43894 | 89.10 | 90.58 | 99.93 | 99.93 | — | 5/1380 | 18/1379 | 12/1379 | 11/1380 | 8/1380 | 15/1380 | 282/1346 | 305/1325 | 739/1340 | 741/1340 |
| E. coli O111:H— | 89.75 | 91.07 | 99.57 | 99.57 | 99.64 | — | 15/1379 | 11/1506 | 14/1380 | 11/1380 | 24/1506 | 301/1420 | 338/1378 | 797/1424 | 797/1424 |
| E. coli O104:H4 | 89.16 | 89.78 | 98.62 | 98.62 | 98.69 | 98.91 | — | 6/1378 | 7/1379 | 12/1379 | 5/1379 | 280/1345 | 305/1324 | 738/1339 | 740/1339 |
| E. coli O121:H19 | 89.99 | 90.31 | 99.06 | 99.06 | 99.13 | 99.27 | 99.56 | — | 5/1379 | 6/1379 | 21/1539 | 309/1447 | 342/1383 | 808/1451 | 808/1451 |
| E. coli SM25(1)∗ | 89.32 | 89.86 | 99.13 | 99.13 | 99.20 | 98.99 | 99.49 | 99.64 | — | 5/1380 | 4/1380 | 284/1346 | 304/1325 | 737/1340 | 739/1340 |
| E. coli KL48(2)∗ | 89.24 | 90.00 | 99.35 | 99.35 | 99.42 | 99.20 | 99.13 | 99.56 | 99.64 | — | 9/1380 | 285/1346 | 307/1325 | 738/1340 | 740/1340 |
| Shigella sonnei | 89.47 | 84.65 | 98.84 | 98.84 | 98.91 | 98.41 | 99.64 | 98.64 | 99.71 | 99.35 | — | 314/1449 | 511/1601 | 813/1457 | 813/1457 |
| Streptomyces sp. | 77.23 | 77.01 | 79.05 | 79.05 | 79.05 | 78.80 | 79.18 | 78.65 | 78.90 | 78.83 | 78.33 | — | 278/1298 | 827/1427 | 829/1427 |
| Bacillus sp. | 74.07 | 70.03 | 76.98 | 76.98 | 76.98 | 75.47 | 76.96 | 75.27 | 77.06 | 76.83 | 68.08 | 78.58 | — | 768/1312 | 770/1312 |
| E. coli O26:H11 | 43.69 | 43.32 | 44.85 | 44.85 | 44.85 | 44.03 | 44.88 | 44.31 | 45.00 | 44.93 | 44.20 | 42.05 | 41.46 | — | 17/1542 |
| Shigella dysenteriae | 43.69 | 43.39 | 44.70 | 44.70 | 44.70 | 44.03 | 44.73 | 44.31 | 44.85 | 44.78 | 44.20 | 41.91 | 41.31 | 98.90 | — |
*Strain in this study.