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. 2014 Jul 31;15(7):415. doi: 10.1186/s13059-014-0415-1

Table 1.

Summary of single-nucleotide polymorphisms

Groups n Total SNPs Intergenic Untranslated region Intronic Coding sequences Ratio of Nonsyn/Syn
3′ UTR 5′ UTR Total Nonsynonymous Synonymous
Wild 10 3,381,514 2,433,878 32,943 15,748 550,643 348,302 190,986 157,316 1.21
Ornamental 9 1,065,215 811,075 7,355 4,224 135,238 107,323 66,796 40,527 1.65
Edible 65 2,098,002 1,607,679 14,702 8,445 262,954 204,222 126,717 77,505 1.63
All genotypes 84 4,567,069 3,340,294 41,933 20,911 706,799 457,132 258,902 198,230 1.31