Table 3.
The datasets used for evaluation
| Dataset | Organism | Accession | Reference | Genome | Read | Number | Number of | Coverage |
|---|---|---|---|---|---|---|---|---|
| number | genome | length | length | of reads | base pairs | |||
| 1 | Bacillus subtilis | DRR000852 | NC_000964.3 | 4,215,606 | 75 | 3,519,504 | 263,962,800 | 62.62 |
| 2 | Chlamydia trachomatis | ERR021957 | NC_000117.1 | 1,042,519 | 37 | 7,825,944 | 289,559,928 | 277.75 |
| 3 | Streptococcus pseudopneumoniae | SRR387784 | NC_015875.1 | 2,190,731 | 100 | 4,407,248 | 440,724,800 | 201.18 |
| 4 | Francisella tularensis | SRR063416 | NC_006570.2 | 1,892,775 | 101 | 6,907,220 | 697,629,220 | 368.57 |
| 5 | Leptospira interrogans | SRR397962 | NC_005823.1 | 4,277,185 | 100 | 7,127,250 | 712,725,000 | 166.63 |
| 6 | Porphyromonas gingivalis | SRR413299 | NC_002950.2 | 2,343,476 | 100 | 9,497,946 | 949,794,600 | 405.29 |
| 7 | Escherichia coli | SRR072099 | NC_000913.2 | 4,639,675 | 36 | 30,355,432 | 1,092,795,552 | 235.53 |
| 8 | Clostridium thermocellum | SRR400550 | NC_009012.1 | 3,843,301 | 36 | 31,994,160 | 1,151,789,760 | 299.69 |
| 9 | Caenorhabditis elegans | SRR065390 | WS222 | 100,286,070 | 100 | 67,617,092 | 6,761,709,200 | 67.42 |
The datasets are sorted increasingly by the total number of base pairs. All datasets and reference genome sequences are obtained from the NCBI, except C.elegans that is from http://www.wormbase.org.