Table 1.
Pearson correlation between expression and enrichment of our H3K27me3 data and H3K27me3 and H3K36me3 from Adli et al. (2010).
WCE | H3 | H3K27me3 | H3K27me3/WCE | H3K27me3/H3 | |
---|---|---|---|---|---|
Gene body | 0.3 | 0.27 | −0.23 | −0.46 | −0.44 |
Promoter | 0.35 | 0.25 | −0.26 | −0.57 | −0.51 |
Adli et al. | H3K27me3 | H3K27me3/WCE | H3K27me3/H3 | ||
Gene body | −0.51 | −0.64 | −0.63 | ||
Promoter | −0.49 | −0.66 | −0.63 | ||
Adli et al. | H3K36me3 | H3K36me3/WCE | H3K36me3/H3 | ||
Gene body | 0.69 | 0.59 | 0.62 | ||
Promoter | 0.43 | 0.26 | 0.35 |
Enrichment is measured by the logarithm of RPKM, or logarithm of ratio of RPKM in the case of the modification with control samples, and expression is measured by the logarithm of RPKM of the RNA-seq samples.