Table 1. Estimates of the features of recombination from the pattern of decline of Δ with physical distance between sites, derived from genomic sequences of single individuals of vertebrates (File S1).
Species | θ | θ′ | ρ1 | x | |
---|---|---|---|---|---|
Primates | |||||
Gorilla gorilla | 0.0031 | 0.0031 | 0.00057 | 0.067 | 3792 |
Macaca mulatta | 0.0026 | 0.0149 | 0.00218 | 0.018 | 1068 |
Pan troglodytes | 0.0010 | 0.0024 | 0.00033 | 0.177 | 4286 |
Pongo abelii | 0.0053 | 0.0036 | 0.00062 | 0.043 | 5662 |
P. pygmaeus | 0.0027 | 0.0047 | 0.00064 | 0.069 | 6852 |
Homo sapiens (Archaic Denisovan) | 0.0004 | 0.0051 | 0.00022 | 0.235 | 3208 |
H. sapiens (African) | 0.0036 | 0.0018 | 0.00064 | 0.066 | 1970 |
H. sapiens (Chinese) | 0.0016 | 0.0039 | 0.00015 | 0.216 | 1833 |
H. sapiens (Watson) | 0.0010 | 0.0161 | 0.00146 | 0.168 | 1389 |
Nonprimate mammals: | |||||
Ailuropoda melanoleuca | 0.0013 | 0.0018 | 0.00023 | 0.250 | 16267 |
Canis familiaris | 0.0009 | 0.0082 | 0.00503 | 0.020 | 1183 |
Loxodonta africana | 0.0013 | 0.0221 | 0.00286 | 0.021 | 1084 |
Ornithorhynchus anatinus | 0.0013 | 0.1709 | 0.28970 | 0.025 | 608 |
Nonmammalian vertebrates: | |||||
Anolis carolinensis | 0.0026 | 0.0094 | 0.00214 | 0.058 | 1927 |
Fugu rubripes | 0.0032 | 0.0042 | 0.00128 | 0.025 | 7238 |
Petromyzon marinus | 0.0044 | 0.0061 | 0.00118 | 0.052 | 2863 |
θ′, an inferred estimate of 4Neu from the fit to Equation 8, not necessarily equivalent to the independently derived ML estimate given as θ); ρ1 = 4Nec, where c is the recombination rate between adjacent sites; x, the fraction of recombination events leading to crossovers; and , the mean conversion-tract length (in base pairs).