TABLE 6.
Concentration | Molecular massa | Rg (Guinier) | Rg (GNOM) | Dmax | Porod volume | Particle densityb |
Ab initio modeling |
|
---|---|---|---|---|---|---|---|---|
χ (DAMMIF)c | NSDd | |||||||
mg/ml | kDa | Å | Å | Å | Å3 | g/cm3 | ||
Hyl | 110.6e | |||||||
10.80 | 146.2 | 48.2 ± 1.0 | 49.5 | 170.5 | 211,709 | 0.87 | 1.93 ± 0.23 | 0.66 ± 0.02 |
5.40 | 143.6 | 48.4 ± 1.4 | 49.7 | 170.1 | 206,944 | 0.89 | 1.60 ± 0.12 | 0.68 ± 0.02 |
2.70 | 149.9 | 46.7 ± 1.2 | 48.2 | 165.6 | 211,245 | 0.87 | 1.64 ± 0.01 | 0.80 ± 0.04 |
1.50 | 155.4 | 47.2 ± 0.6 | 48.1 | 166.6 | 220,516 | 0.83 | 1.43 ± 0.01 | 0.64 ± 0.02 |
1.35 | 134.9 | 44.7 ± 3.5 | 46.6 | 158.1 | 193,604 | 0.95 | 1.44 ± 0.01 | 0.73 ± 0.03 |
1.00 | 144.7 | 45.1 ± 2.0 | 46.8 | 159.5 | 207,955 | 0.88 | 1.32 ± 0.01 | 0.54 ± 0.06 |
BSA | 66.4e | |||||||
1.00 | 66.5 | 29.1 ± 0.9 | 28.8 | 81 | 102,486 | 1.08 | NAf | NA |
a Calculated by the method of Fischer et al. (55).
b Calculated by the method of Rambo et al. (45), based on a monomeric solution.
c Average of χ values determined for the 10 models calculated by the DAMMIF ab initio modelling procedure (35).
d Normalized spatial discrepancies averaged for the 10 models calculated by the DAMMIF ab initio modeling procedure (36).
e Theoretical molecular masses calculated by primary sequence (20).
f NA, not applicable.