Table 3.
Assembler | Sequencing data | FR reads | RF reads | Tandem | Median insert Size ± Abs. Dev. | Mean insert Size ± St. Dev. |
---|---|---|---|---|---|---|
CA | Illumina MiSeq | 7,163,609 | 690 | 739 | 470 ± 45 | 480 ± 72 |
MaSurCA | Illumina MiSeq | 7,315,963 | 340 | 137 | 469 ± 44 | 478 ± 71 |
CLCBio | Illumina MiSeq | 6,917,178 | 103 | 29 | 466 ± 44 | 475 ± 72 |
CA | Illumina-corrected PacBio reads | 7,292,995 | 694 | 298 | 470 ± 44 | 479 ± 71 |
CA | Illumina- and 454-corrected PacBio reads | 7,459,123 | 600 | 288 | 470 ± 44 | 480 ± 71 |
HGAP2 | PacBio reads | 7,544,255 | 696 | 826 | 471 ± 45 | 480 ± 71 |
HGAP2 with trimming | PacBio reads | 7,564,549 | 697 | 827 | 471 ± 45 | 480 ± 71 |
This table provides the statistics about the mapping of all of the Illumina read pairs against all of the contigs generated by various combinations of assemblers and data sets as assessed by PICARD. The statistics reported include the number of FR reads, the number of RF reads, the number of tandem reads, the median insert ± on absolute deviation, and the mean insert size ± one absolute deviation.