Table 1. Oligonucleotide sequences for DNA substrates (5′ to 3′).
Oligonucleotide, size | Sequence |
---|---|
Helicase primers | |
22-15A, 37 nt | TTTTTTTTTTTTTTTTTAGGGTTAGGGCATGCACTAC |
22-15B, 37 nt | GTAGTGCATGCCCTAACCCTAATTTTTTTTTTTTTTT |
Exonuclease primers | |
TelX, 49 nt | TTTTTTTTTTTTTTTGGTGATGGTGTATTGAGTGGGATGCATGCACTAC |
TelY, 49 nt | GTAGTGCATGCATCCCACTCAATACACCATCACCTTTTTTTTTTTTTTT |
32-5over, 32 nt | TGACGTGACGACGATCAGGGTACGTTCAGCAG |
43-5over, 43 nt | AGTGCAGACTGCTGCTGAACGTACCCTGATCGTCGTCACGTCA |
Partial duplex DNA substrates were constructed by annealing appropriate top primer to template oligonucleotide. 22-15A and 22-15B were used to construct the 37 nt fork, TelX and TelY – the 49 nt fork and 32-5over and 43-5over—the 32/43 nt 5′-overhang.