Table 2. F tests comparing the variance in mutational impact on intrinsic DNA flexibility (dTRX) for functionally conserved versus adaptively evolving genes (observed in Figure 7).
Species/group | F value syn | P value syn | F value non-syn | P value non-syn | n conserved | n adaptively evolving |
---|---|---|---|---|---|---|
Methanococcus maripaludis | 5.13585 | 4.44 × 10−15 | 0.3902547 | 5.63 × 10−11 | 1169 | 77 |
Bacillus sp | 6.863267 | 0 | 0.2741067 | 5.81 × 10−26 | 1565 | 94 |
Brucella-Ochrobactrum | 8.410006 | 0 | 0.4192114 | 1.25 × 10−09 | 1534 | 77 |
Campylobacter sp | 6.3016 | 5.30 × 10−08 | 0.3611305 | 2.31 × 10−06 | 869 | 31 |
Listeria sp | 13.05 | 1.62 × 10−14 | 0.1765246 | 1.80 × 10−22 | 884 | 37 |
Mycobacterium sp | 13.05 | 1.62 × 10−14 | 0.1765246 | 1.80 × 10−22 | 884 | 37 |
Nitrobacter sp | 6.813388 | 1.38 × 10−09 | 0.5375341 | 0.003787364 | 709 | 36 |
Prochlorococcus marinus | 3.568853 | 0 | 0.5972523 | 9.04 × 10−06 | 1045 | 147 |
Pseudomonas aeruginosa | 3.263118 | 1.27 × 10−07 | 0.3782765 | 4.61 × 10−10 | 3142 | 59 |
Pseudomonas sp | 8.341558 | 0 | 0.2492518 | 9.13 × 10−23 | 2495 | 63 |
Pseudomonas syringae | 6.507828 | 0.000163719 | 0.3905284 | 0.002296555 | 409 | 15 |
Rhodobacter sphaeroides | 6.981686 | 5.92 × 10−05 | 0.3803578 | 0.001223606 | 408 | 16 |
Rickettsia sp | 14.15104 | 1.98 × 10−06 | 2.42576 | 0.05746677 | 607 | 14 |
Shewanella sp | 4.076466 | 1.45 × 10−13 | 0.2152939 | 1.09 × 10−36 | 1770 | 87 |
Vibrio sp | 5.911175 | 2.21 × 10−06 | 0.3008131 | 2.23 × 10−07 | 764 | 25 |
Yersinia sp | 22.60118 | 0 | 0.1968196 | 7.17 × 10−23 | 1426 | 43 |
Tests were conducted independently for effect of synonymous and non-synonymous sites on dTRX across all aligned gene sets.