Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2014 Jul 17;42(16):e125. doi: 10.1093/nar/gku600

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 6. — Relationships between transcript structure and chromatin signature. (A) Densities of ChIP Seq signals in HeLa cells for the indicated chromatin signatures. Color code of the ChIP Seq tag density is shown in the margin. Cases where the transcript levels are >5 ppm (upper) and <5 ppm (lower) are shown in blue and red, respectively. For Pol II, H3K4me1, H3K4me3 and H3K27Ac, peaks within 5 kb from the 5′-end of the RefSeq genes were used for the centralization. For H3K36me3, H3K27me3, Rad21 and CTCF, the transcript region defined as the region between TSC and PAC was normalized, and the ChIP Seq signals were plotted accordingly. For CTD-PS2, the peaks located within the range of −5 kb to 5 kb from the PACs were selected and centralized to the center of the peaks. (B) Average values of the ChIP Seq signal intensities at the indicated positions (x-axis). (C, D) Results of similar analysis to (A) and (B) for the preferred TSC-PAC regions.