Table 3.

Genes with preferred TSC-PAC pairs

GO ID	GO term	Number of genes with preferred TSC-PAC	Number of genes in total population	P-value	False detection rate
0005096	GTPase activator activity	15	195	8E−06	0.0016
0043547	Positive regulation of GTPase activity	12	134	1E−05	0.0016

Results of the GO term enrichment analysis. Enrichment of the terms was evaluated by calculating hypergeometric distributions; statistical significances are shown in the last column. The numbers of genes associated with the indicated GO terms in the genes with ‘preferred’ TSC-PACs and in the total population are shown in the third and fourth columns, respectively. To remove too loose or too tight GO terms, only GO terms having 100–500 genes were considered. The P-values are from the GO term enrichment analysis. The P-values in the main text are calculated based on the deviations in tag counts regarding expression patterns and connectivity of the transcripts. Hits giving P-values of P < 1e−5 are shown. Note, in general, the P-values in the tables are supported large numbers of the data points (tag counts) than the former case (number of genes), thus may have given more significant P-values.