Table 14. COSMIC and InSiGHT variant extraction coverage combining OMM and SETH.
The data sets considered are MEDLINE abstracts (medline), Open Access PMC articles (pmc.ft), PDF articles when no Open Access PMC articles are available (pdf), tables available from the Open Access PMC Articles’ XML (table), supplementary material (sup) and the combination from all the sources (all).
| Database | Data set | PMIDS | Total | Matched | Recall |
|---|---|---|---|---|---|
| COSMIC
COSMIC COSMIC COSMIC COSMIC |
medline
pmc.ft table sup |
129
341 11 182 95 |
33814
33814 33814 33814 33814 |
145
736 7 640 22562 |
0.0043
0.0218 0.0002 0.0189 0.6672 |
| COSMIC | all | 400 | 33814 | 23544 | 0.6963 |
| Database | Data set | PMIDS | Total | Matched | Recall |
| InSiGHT
InSiGHT InSiGHT InSiGHT InSiGHT |
medline
pmc.ft table sup |
3
6 2 4 1 |
252
252 252 252 252 |
5
8 7 48 0 |
0.0198
0.0317 0.0278 0.1905 0.0000 |
| InSiGHT | all | 9 | 252 | 61 | 0.2421 |