Table 21. Protein variants annotated by each mutation extraction, using all the sources from the articles, tool grouped by type.
The type of each variant has been annotated using SETH, thus the variant types delivered by SETH are considered. The tools are Extractor of Mutations (EMU), OpenMutationMiner (OMM), MutationFinder (MF), tmVar and SNP Extraction Tool for Human Variations (SETH).
| Tool | Type | Frequency
(COSMIC) |
Frequency
(InSiGHT) |
|---|---|---|---|
| EMU | All
SUBSTITUTION SILENT UNKNOWN |
35871
35560 157 154 |
102
100 2 - |
| OMM | SUBSTITUTION | 29157 | 164 |
| MF | SUBSTITUTION | 4836 | 117 |
| SETH | All
SUBSTITUTION UNKNOWN |
28862
28753 109 |
42
41 1 |
| tmVar | All
SUBSTITUTION DELETION UNKNOWN |
16461
16352 90 19 |
54
53 1 - |