Table 15. COSMIC and InSiGHT variant extraction coverage combining OMM, SETH and EMU.
The data sets considered are MEDLINE abstracts (medline), Open Access PMC articles (pmc.ft), PDF articles when no Open Access PMC articles are available (pdf), tables available from the Open Access PMC Articles’ XML (table), supplementary material (sup) and the combination from all the sources (all).
| Database | Data set | PMIDS | Total | Matched | Recall |
|---|---|---|---|---|---|
| COSMIC
COSMIC COSMIC COSMIC COSMIC |
medline
pmc.ft table sup |
149
380 68 222 112 |
33814
33814 33814 33814 33814 |
151
794 34 692 22752 |
0.0045
0.0235 0.0010 0.0205 0.6729 |
| COSMIC | all | 511 | 33814 | 23826 | 0.7046 |
| Database | Data set | PMIDS | Total | Matched | Recall |
| InSiGHT
InSiGHT InSiGHT InSiGHT InSiGHT |
medline
pmc.ft table sup |
3
9 3 4 1 |
252
252 252 252 252 |
5
26 7 64 88 |
0.0198
0.1032 0.0278 0.2540 0.3492 |
| InSiGHT | all | 12 | 252 | 152 | 0.6032 |