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. 2014 Sep 19;3:175. Originally published 2014 Jul 30. [Version 2] doi: 10.12688/f1000research.4680.2

PMC4176427.1; 2014 Jul 30
PMC4176427.2; 2014 Sep 19

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Copyright: © 2014 Fortin JP et al.

This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).

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Figure 1. — IDAT files are parsed using minfi and illuminaio into a RGChannelSet. This object is summarized using shinySummarize. Optionally, the data are pre-processed and the pre-processed data are summarized. For visualization, runShinyMethyl is used on either one or two sets of summarized data.