Table 2.
Read levels of genes involved in mRNA decay in wild-type and pnpA strains.
| Gene Name | Enzyme name (activity) | wild type | pnpA | pnpA/wt Ratio | P-value |
|---|---|---|---|---|---|
| rnr | RNase R (3′ exo) | 6.15 | 8.78 | 1.43 | 0.04 |
| rph | RNase PH (3′ exo) | 3.33 | 5.34 | 1.60 | 0.01 |
| yhaM | YhaM (3′ exo) | 6.02 | 3.81 | 0.63 | 0.00 |
| rnjA | RNase J1 (5′ exo/endo) | 16.05 | 18.60 | 1.16 | 0.04 |
| rnjB | RNase J2 (5′ exo/endo) | 13.54 | 17.30 | 1.28 | 0.00 |
| rny | RNase Y (endo) | 38.36 | 37.59 | 0.98 | 0.85 |
| rnc | RNase III (endo) | 9.92 | 22.42 | 2.26 | 0.01 |
| nrnA | nanoRNase | 4.50 | 2.85 | 0.63 | 0.00 |
| rppH | RNA pyrophosphohydrolase | 2.34 | 1.49 | 0.64 | 0.01 |