Table 2.
Performances on transcripts derived from PacBio and 454
| Dataset | Tool | Sensitivity | Specificity | PPV | NPV | Accuracy |
|---|---|---|---|---|---|---|
| MCF-7 (PacBio) | PLEK | 0.947 | 0.958 | 0.998 | 0.407 | 0.947 |
| CPC | 0.999 | 0.190 | 0.970 | 0.958 | 0.970 | |
| CNCI | 0.918 | 0.787 | 0.991 | 0.269 | 0.913 | |
| HelaS3 (454) | PLEK | 0.955 | 0.925 | 0.999 | 0.262 | 0.954 |
| CPC | 0.999 | 0.472 | 0.991 | 0.926 | 0.990 | |
| CNCI | 0.939 | 0.811 | 0.997 | 0.189 | 0.937 |
Bold face type indicates the best performances (sensitivity, specificity, PPV, NPV, accuracy) among PLEK, CPC and CNCI. Italic face type indicates the worst specificity and NPV among these tools.