TABLE 6.
Genotyping of IPNV and VNNV isolated from the oceanographic campaigns
| Isolate type, OC,a and strain name | Fish species | Typeb | GenBank accession no. |
|---|---|---|---|
| IPNV | |||
| I, SpSps-IAusc1538.10 | Sphyraena sphyraena | WB/WB | NPc |
| II | |||
| SpDv-IAusc518.11 | Diplodus vulgaris | Ab/Ab | NP |
| SpDv-IAusc519.11 | Diplodus vulgaris | WB/Ab | NP |
| SpDv-IAusc520.11 | Diplodus vulgaris | Ab/Ab | NP |
| SpDb-IAusc525.11 | Diplodus bellottii | WB/WB | NP |
| SpPa-IAusc526.11 | Pagellus acarne | WB/WB | NP |
| SpPa-IAusc527.11 | Pagellus acarne | WB/Ja | NP |
| SpPa-IAusc528.11 | Pagellus acarne | Ab/Ab | NP |
| SpPa-IAusc530.11 | Pagellus acarne | WB/WB | NP |
| SpPe-IAusc531.11 | Pagellus erythrinus | WB/WB | NP |
| SpPe-IAusc535.11 | Pagellus erythrinus | WB/WB | NP |
| SpMs-IAusc541.11 | Mullus surmulletus | WB/WB | NP |
| III, SpDv-IAusc221.12 | Diplodus vulgaris | WB/WB | NP |
| VNNV, I | |||
| SpMb-IAusc1544.10 | Mullus barbatus | RG/RG | KM001714, KM001715 |
| SpHd-IAusc1547.10 | Halobatrachus didactylus | RG/RG | KM001713, KM001712 |
| SpDv-IAusc1549.10 | Diplodus vulgaris | RG/RG | KM001711, KM001710 |
| SpPa-IAusc1551.10 | Pagellus acarne | RG/RG | KM001717, KM001716 |
| SpChl-IAusc1554.10 | Chelidonichthys lucerna | RG/RG | KM001709, KM001708 |
| SpSpc-IAusc1556.10 | Spondyliosoma cantharus | RG/RG | KM001719, KM001718 |
a
OC, oceanographic campaigns (I, November 2012; II, March 2011; III, October to December 2011).
b
Genotyping of segment A/segment B of IPNV and RNA1/RNA2 of VNNV.
c
NP, sequences not published in GenBank because they were under 200 bp (see the supplemental material).