FIG 2.

X. axonopodis strain genealogy inferred by clonal frame tree. The clonal frame tree was obtained on the broad set of housekeeping genes using Clonal Frame version 1.1. A 50% majority rule consensus tree was computed without taking recombination into consideration (A) and with taking recombination into consideration (B). The scale on the x axis shows the evolutionary time in coalescent units. Different colors show the conserved groups, lineages, and sublineages considering recombination. Xp, X. perforans.