Skip to main content
. 2014 Oct;88(20):12017–12025. doi: 10.1128/JVI.01625-14

TABLE 2.

Nucleotide identities of strains isolated in contiguous years

Sequencea % nucleotide identity
M12 vs M0 M24 vs M12 M36 vs M24 M48 vs M36
Complete genome 99.7 99.7 99.8 99.3
Complete ORF1 99.9 99.7 99.9 99.2
Methyltransferase 99.6 99.3 98.5 98.5
Y domain 99.7 98.8 99.7 99.1
Papain-like cysteine protease 99.8 100 99.8 98.8
PPR 100 99.4 99.4 98.5
X domain 100 99.6 99.0 99.2
Helicase 100 100 100 99.6
RdRp 99.9 100 100 99.5
Complete ORF2 99.9 99.9 100 99.9
ORF2-S 100 100 100 99.9
ORF2-M 99.8 99.7 100 99.8
ORF2-P 99.7 99.8 99.8 99.8
ORF3 100 100 100 100
a

PPR, polyproline region; RdRp, RNA-dependent RNA polymerase.