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. 2014 Oct;88(20):11955–11964. doi: 10.1128/JVI.01809-14

TABLE 1.

Nucleotide sequences of primers used for RT-PCRs

Region and orientation Code Primer sequence Positiona
5′NCR
    Sense 5NCR-44 GCG GCC AGT ACA CTG GTA TT 44–63
    Antisense 5NCR-153 ACT GGT TTG TAC CCC CTC CT 134–153
5NCR-252 TCT CGA AGT ACA TGA GCG GAT A 231–252
5NCR-455 GCC GGA GGA CTC TCA GGT A 437–455
5NCR-654 ATC AAA TTC TCA CCG GAT GG 635–654
5NCR-861 GCT CGC AGA ATC CCT GTA ATA A 840–861
VP1
    Sense VP1–2521 ACG AGA AAT GCC TTG ACA CC 2521–2540
    Antisense VP1–2737 AAG CTC CTC TTG CGA AGA AA 2718–2737
VP1–2937 ATT TAG TGC GTG CCC ATT GT 2918–2937
VP1–3125 ACT TTG GCA AAC CCA TCG TA 3106–3125
VP1–3338 TAG TCA ACC CCT GGT CCG TA 3319–3338
3′NCR
    Antisense 3NCR-7412 ACA ACA GTA TGA CCC AAT CCA A 7391–7412
    Sense 3NCR-7288 AAG ATT AGA AGT GTG CCA ATC G 7288–7309
3NCR-7201 AGA TCC CAG AAA CAC TCA GGA T 7201–7221
3NCR-7011 CTA GCC CAA TCA GGA AAA GAC T 7011–7033
3NCR-6782 ATT ATC TGA ATC ACT CGC ACC A 6782–6803
3NCR-6583 AAG AAC CCA GGT GTA GTG ACA G 6583–6604
a

That is, the nucleotide position in the MEF-1 genome (accession no. AY238473).