TABLE 4.
Phylogenetic clusters identified in this study
Phylogenetic clustera | Closest genomeb | Genotype by RIVM algorithmc | No. of genomes | Frequency (%) in 201 genomes |
---|---|---|---|---|
1 | NV_GII_VNM_2009_KC175360 | GII.P4.DH06b_GII.4.DH06b | 140 | 69.65 (67.6)d |
NV_GII_VNM_2009_KC175395 | ||||
2 | NV_GII_VNM_2009_KC175402 | GII.P4.DH06b_GII.4.DH06b | 2 | |
3 | NV_GII4_TW_2007_JN400615 | GII.P4.DH06b_GII.4.DH06b | 12 | |
NV_GII4_Ehime_2007_AB541241 | ||||
4 | NV_GII_VNM_2010_KC175383 | GII.P4.NO09_GII.4.NO09 | 20 | 9.95 (9.5) |
5 | NV_Pune_2007_EU921389 | GII.P21_GII.3 | 19 | 9.45 (10.2) |
6 | NV_Pune_2007_EU921389 | GII.Pg_GII.12 | 2 | 0.99 (0.6) |
NV_GII2_12_Wahroonga_2009_JQ613568 | ||||
7 | NV_GII_Gifu_1999_AB084071 (<50%) | GII.P7_GII.6 | 3 | 1.49 (2.5) |
8 | NV_GII_Gifu_1999_AB084071 (<50%) | GII.P7_GII.6 | 3 | 1.49 (2.5) |