TABLE 1.
Parameter | HPyV6 VP1 | HPyV7 VP1 |
---|---|---|
Space group | C2 | C2 |
Unit cell dimensions | ||
a, b, c (Å) | 183.9, 89.4, 125.3 | 209.7, 86.4, 84.2 |
α, β, γ (°) | 90.0, 131.3, 90.0 | 90.0, 92.1, 90.0 |
Data collection | ||
Resolution (Å) | 30.0–1.8 (1.85–1.80) | 30.0–1.70 (1.75–1.70) |
No. of unique reflections | 140,450 (10,046) | 161,009 (9,962) |
Redundancy | 4.1 (4.1) | 3.9 (3.9) |
Rmeas (%) | 7.0 (56.8) | 6.7 (55.9) |
I/σ | 14.8 (2.8) | 15.7 (2.4) |
CC1/2 (%) | 99.8 (84.7) | 99.9 (75.4) |
Completeness (%) | 99.2 (96.4) | 97.8 (82.1) |
Wilson B-factor (Å2) | 28.9 | 26.0 |
Refinement | ||
Rwork/Rfree (%) | 14.8/17.4 | 16.9/19.6 |
No. of atoms | ||
Protein | 10,171 | 9,856 |
Water | 1,070 | 990 |
Average B-factor (Å2) | ||
Protein | 28.7 | 24.8 |
Water | 34.2 | 29.0 |
RMSDs | ||
Bond lengths (Å) | 0.009 | 0.010 |
Bond angles (°) | 1.381 | 1.391 |
Ramachandran plot (calculated using MolProbity Server) | ||
Favored (%) | 95.9 | 97.5 |
Allowed (%) | 4.1 | 2.4 |
Outliers (%) | 0.0 | 0.1 |
Values for the highest-resolution bin are given in parentheses. CC1/2, correlation between intensities from random half-data sets. , where n is the number of observations of the reflection and <Ihkl,j> the intensity of symmetry (or Friedel)-related observations. , where Fobs and Fcalc are the observed and calculated structure factors, respectively. A total of 5% of the reflections were not used during structure refinement to calculate Rfree.