Table 1. Summary of Trp fluorescence parameters measured for Ail-WT and its Trp mutants in various DPRs.
Average lifetime (<τ>, ns)b | Anisotropy (r)b | Bimolecular quenching constant (kq, × 109 M−1 s−1) | |||||||
---|---|---|---|---|---|---|---|---|---|
DPRa | WT | W42F | W149F | WT | W42F | W149F | WT | W42F | W149F |
700:1 | 3.62 ± 0.2 | 2.43 ± 0.2 | 3.17 ± 0.1 | 0.143 | 0.122 | 0.152 | 1.40 | 1.54 | 1.85 |
700:1 (D) | 1.96 ± 0.0 | 1.68 ± 0.1 | 1.77 ± 0.1 | 0.068 | 0.070 | 0.062 | - | - | - |
1750:1 | 3.96 ± 0.1 | 2.93 ± 0.2 | 3.72 ± 0.3 | 0.140 | 0.123 | 0.159 | 1.33 | 1.36 | 1.77 |
1750:1(D) | 2.10 ± 0.1 | 1.75 ± 0.1 | 1.87 ± 0.1 | 0.080 | 0.068 | 0.072 | - | - | - |
3500:1 | 3.97 ± 0.1 | 2.89 ± 0.1 | 4.34 ± 0.1 | 0.141 | 0.120 | 0.154 | 1.31 | 1.35 | 1.56 |
3500:1 (D) | 2.18 ± 0.1 | 1.81 ± 0.0 | 1.86 ± 0.0 | 0.106 | 0.080 | 0.069 | - | - | - |
0:1 (U) | 1.75 ± 0.1 | 1.66 ± 0.1 | 1.61 ± 0.1 | 0.050 | 0.046 | 0.047 | 4.18 | 4.31 | 4.78 |
0:1 (A) | 0.32 ± 0.0c | 0.14 ± 0.0c | 0.20 ± 0.0c | 0.123 | 0.143 | 0.142 | -c | -c | -c |
aHere (D) represents the refolded protein denatured by the addition of 6.4 M GdnHCl, and therefore retains the respective LDAO amounts. (U) is unfolded protein in 8.0 M GdnHCl and contains no LDAO. (A) is aggregated protein sample prepared in Tris-HCl pH 8.5 and contains 0.16 M GdnHCl.
bAll samples were incubated for 48 h at 25°C before obtaining measurements. <τ> = Στ = αiτi
cLifetimes could not be accurately determined due to interference from scattering. Hence, the kq values were also not calculated.