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. 2014 Sep 30;4:6508. doi: 10.1038/srep06508

Table 2. Position and distribution of Trp residues in structures of known transmembrane barrels.

          Position of Trp residued
S. No.a,b PDB IDc Proteina,b # of β-strandsd,e # of Trp residues Membrane interface Transmembrane Extra-membrane
1 1P4T NspA 10 (8) 0 - - -
2 2POR Porin 22 (16) 1 1 - -
3 3QRA Ail 9 (8) 2 1 1 -
4 1QJ8 OmpX 8 (8) 2 1 1 -
5 2LHF OprH 10 (8) 2 2 - -
6 3HW9 OmpF 25 (16) 2 1 1 -
7 1E54 Omp32 24 (16) 2 - 1 1
8 3DZM TtoA 14 (8) 3 1 - 2
9 3FID LpxR 17 (12) 3 - 1 2
10 2X27 OprG 17 (8) 4 4 - -
11 3BRY TbuX 27 (14) 4 2 2 -
12 1K24 OpcA 15 (10) 4 3 1 -
13 1UYN NalP 14 (12) 4 3 - 1
14 1H6S Porin 19 (16) 4 3 1 -
15 3EMO Hia [6 (4)]x3f 1 1 - -
16 4FQE KdgM 14 (12) 3 2 - 1
17 1UUN MspA [14 (2)]x8f 4 3 1 -
18 3WI4 PorB [22 (16)]x3f 4 3 - 1
19 1WP1 OprM [13 (4)]x3f 4 2 - 2
20 2LME YadA [5 (4)]x3f 2 1 - 1

aNon-redundant structures were retrieved from PDBTM: Protein Data Bank of Transmembrane Proteins; http://pdbtm.enzim.hu/. Only proteins with a maximum of four Trp residues are listed.

bExamples 15-19 have been classified as porins in PDB; 20 is an anchor protein.

cPDB: RCSB Protein Data Bank; http://www.rcsb.org/pdb.

dInformation derived from both PDBTM and PDB.

eNumbers provided represent the total number of β-strands in the structure and those in brackets represent the total number of transmembrane β-strands.

f[Number of strands in one monomer (Number of transmembrane strands in one monomer)] x Number of monomers.