Table 1. Relative CPU times for each package to process the n = 4, 10% synthetic dataset in Fig. 5.
Package | CPU time |
---|---|
PoissonSeq | 0.38 |
QLSpline | 16.45 |
edgeR | 0.28 |
Polyfit-edgeR | 0.32 |
DESeq | 1.00 |
Polyfit-DESeq | 1.07 |
DESeq2 | 0.82 |
Package | CPU time |
---|---|
PoissonSeq | 0.38 |
QLSpline | 16.45 |
edgeR | 0.28 |
Polyfit-edgeR | 0.32 |
DESeq | 1.00 |
Polyfit-DESeq | 1.07 |
DESeq2 | 0.82 |