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. 2014 Mar 26;118(16):4351–4362. doi: 10.1021/jp501737x

Table 8. Interatomic Distances in Human GlxI Calculated from Molecular Dynamics Simulations (20 ns)a.

systemb O2 Gln33 O1 Glu99 His126 Glu172 HO(Oc) HOH(OHc)
MnA 2.20 ± 0.05 2.11 ± 0.03 2.34 ± 0.07 2.10 ± 0.03 2.17 ± 0.03 2.22 ± 0.05
MnB 2.20 ± 0.05 2.10 ± 0.03 2.36 ± 0.07 2.11 ± 0.03 2.17 ± 0.03 2.22 ± 0.05
CoA 2.20 ± 0.05 2.11 ± 0.05 2.35 ± 0.07 2.11 ± 0.03 2.17 ± 0.03 2.22 ± 0.05
CoB 2.20 ± 0.05 2.09 ± 0.05 2.37 ± 0.08 2.09 ± 0.03 2.17 ± 0.03 2.22 ± 0.09
MgA 2.15 ± 0.05 2.05 ± 0.03 2.32 ± 0.09 2.04 ± 0.03 2.09 ± 0.03 2.15 ± 0.05
MgB 2.15 ± 0.05 2.03 ± 0.03 2.36 ± 0.11 2.04 ± 0.03 2.09 ± 0.03 2.15 ± 0.05
ZnA 2.07 ± 0.04 2.00 ± 0.03 2.21 ± 0.06 1.99 ± 0.03 2.07 ± 0.03 2.10 ± 0.04
ZnB 2.08 ± 0.04 1.99 ± 0.03 2.24 ± 0.08 2.01 ± 0.03 2.07 ± 0.03 2.10 ± 0.04
ZnA,exp65 2.1 (2.0) 2.0 (1.9) 2.0 (2.1) 2.0 (3.3) 2.6(2.1) 2.3 (2.1)
Zne,exp65 1.9 (2.1) 2.0 (1.9) 2.1 (2.1) 2.0 (3.3) 2.8(2.1) 2.2 (2.0)
a

Experimental distances were obtained from the corresponding Zn2+–GlxI crystal structure (PDB ID, 1QIP). The zinc ligand distances for the transition state analogue bound-protein structure (PDB ID, 1QIN) are shown in parentheses.b

b

Subscripts A and B after each metal refer to the relevant active site.

c

In the HIPC–GSH complex the oxygen atoms of the hydroxycarbamoyl group of the inhibitor replace the two oxygen atoms.