Table 1.

Accurate chromosome-spanning haplotypes in mouse ES cells

Chromosome	Phasable span of chromosome	Variants spanned in MVP block	Percent chromosome spanned in MVP block	Percent variants phased in MVP block	Percent accuracy of phasing in MVP block
Chr1	194,188,030	1,409,566	100.000	95.231	99.627
Chr2	178,746,638	1,109,866	99.997	93.703	99.569
Chr3	156,599,306	1,120,125	100.000	94.911	99.639
Chr4	152,628,848	1,030,740	99.997	94.366	99.546
Chr5	149,536,169	1,063,616	99.999	94.414	99.521
Chr6	146,516,752	1,074,301	100.000	96.086	99.674
Chr7	149,523,520	965,142	99.999	94.152	99.427
Chr8	128,735,517	939,132	99.948	95.060	99.558
Chr9	121,070,077	832,047	99.987	94.547	99.600
Chr10	126,991,341	980,549	99.996	95.624	99.735
Chr11	118,843,488	861,541	99.996	94.612	99.577
Chr12	118,256,511	794,128	100.000	94.588	99.515
Chr13	117,284,037	858,859	100.000	95.494	99.679
Chr14	122,159,750	823,216	99.998	94.707	99.541
Chr15	100,494,041	719,697	100.000	94.811	99.618
Chr16	95,301,285	711,670	99.898	95.471	99.668
Chr17	92,272,062	616,348	99.999	93.669	99.443
Chr18	87,771,251	674,750	99.989	95.631	99.599
Chr19	58,256,454	411,457	99.869	95.243	99.662

Table of the results of Hi-C–based haplotype phasing in CAST×J129 system. For each chromosome, we generated complete (>99.9% of bases spanned), high-resolution (~95% of het. variants phased), and accurate haplotypes (>99.5% correctly phased het. variants).