Table 1. Full-length and fragmented RmInt1 phylogenetically related elements in Rhizobia.
| Namea | Species | Strain | Host repliconb | Size | Accesion (intron boundaries) | Reference |
|---|---|---|---|---|---|---|
| S. me GR4 RmInt1 | S. meliloti | GR4 | Chr(4); pRmeGR4b (1); pRmeGR4c(5) | 1884 | Y11597 (1–1884) | Martínez-Abarca et al. (1998, 2013) |
| S. me 1021 RmInt1 | S. meliloti | 1021 | pSymA (1); pSymB(2) | 1884 | AL591985 (675027–676910) | Galibert et al. (2001) |
| S. me SM11 RmInt1 | S. meliloti | SM11 | Chr(2); pSmeSM11c (3); pSmeSM11d(1) | 1884 | CP001830 (3677924–3679807) | Schneiker-Bekel et al. (2011) |
| S. me BL225C RmInt1 | S. meliloti | BL225C | Chr(2); pSINMEB01 (1); pSINMEB02(2) | 1884 | CP002740 (667127–669010) | Galardini et al. (2011) |
| S. me Rm41 RmInt1 | S. meliloti | Rm41 | pSymB(1) | 1884 | NC_018701 (1129686–1127803) | Weidner et al. (2013) |
| E. ad 5D19 RmInt1 | Ensifer adhaerens | 5D19 | ND | 1884 | AY248839 (1-1884) | Fernandez-Lopez et al. (2005) |
| S. fred NGR234 RmInt1 F | S. fredii | NGR234 | pNGR234b (1) | 487c | NC_012586 (796157–796643) | Schmeisser et al. (2009) |
| S. me AK83 RmInt1 F | S. meliloti | AK83 | pSINME01(1) | 1519d | CP002784 (8422-9931) | Galardini et al. (2011) |
| S. te ORS22 RmInt1-like | S. teranga | ORS22 | ND | 1884 | AY608908 | Fernandez-Lopez et al. (2005) |
| S. md WSM419 Sr.md.I1 | S. medicae | WSM419 | Chr (1); pSMED01(1); pSMED02(2) | 1885 | CP000738 (1305475–1307359) | Reeve et al. (2010) |
| S. me GR4 RmInt2 | S. meliloti | GR4 | pRmeGR4c(4); pRmeGR4d(3) | 1887 | NC_019849 (1678444–1680330) | Martinez-Abarca et al. (2013) |
| R. et 8C-3 F | Rhizobium etli | 8C-3 | ND | 1262 | DQ058416 (91480–92624) | Flores et al. (2005) |
| R. et CIAT652 F | R. etli | CIAT 652 | pB | 1219 | CP001076 (126968–125954) | Gonzalez et al. (2010) |
| R. et CFN42 F | R. etli | CFN 42 | p42d | 1208 | REU80928 (105330–104316) | Girard et al. (1991) |
| R. et CFN42 (2) F | R. etli | CFN 42 | p42a | 856 | CP000134 (63346–62493) | Gonzalez et al. (2006) |
| R. et CE3 F | R. etli | MB043 | pa | 856 | AF176227 (10069–9216) | Bittinger et al. (2000) |
| E. ad LMG20582 | E. adhaerens | R-6387 | ND | 764 | AY608901 (162–925) | Fernandez-Lopez et al. (2005) |
| S. me GR4 pRmeGR4b FRE652 | S. meliloti | GR4 | pRmeGR4b | 652 | NC_019847 (73323–73974) | Martinez-Abarca et al. (2013) |
| S. me AK83 FRE652 (2) | S. meliloti | AK83 | Chr3 (pSymA-like) | 653 | NC_015591 (330796–331448) | Galardini et al. (2011) |
| S. me C017 pHRC017 FRE652 | S. meliloti | C017 | pHRC017 | 651 | JQ665880 (63063–63713) | Crook et al. (2012) |
| S. me SM11 FRE652 | S. meliloti | SM11 | pSmeSM11c (pSymA-like) | 651 | CP001831 (95351–96001) | Schneiker-Bekel et al. (2011) |
| S. me AK83 FRE652 (1) | S. meliloti | AK83 | Chr3 (pSymA-like) | 644 | NC_015591 (1249601–1248958) | Galardini et al. (2011) |
| S. me BL225C FRE652 | S. meliloti | BL225C | pSINMEB01 (pSymA-like) | 145 | CP002741 (821391–821535) | Galardini et al. (2011) |
| S. md WSM419 FRE652 | S. medicae | WSM419 | pSMED02 (pSymA-like) | 639 | CP000740 (1062090–1061452) | Reeve et al. (2010) |
| S. md RMO02 FRE652 | S. medicae | RMO02 | ND | 650 | AY608903 (148–797) | Fernandez-Lopez et al. (2005) |
Abbreviations: F, fragmented; ND, not determined.
a
Name corresponding to Figure 2.
b
Replicon and no of copies (in parenthesis).
c
Group II intron interrupted at nt 487 by a DNA fragment (3803 nt) containing several transposases.
d
Group II intron with an internal deletion from nucleotides 1520–1844.