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. Author manuscript; available in PMC: 2014 Oct 2.
Published in final edited form as: Isr J Chem. 2013 Jun;53(6-7):469–483. doi: 10.1002/ijch.201300009

Table 4.

Comparison of some data from Table 3 to pKa correlations.[a]

Base pair Melting temp. (°C) ΔpKa pKa 3pH for each base pH was conducted at 7.9
3 H-bonds:
isoG :isoC 61.5, 63.3 ~4.8 1 (isoG), 3.7 (isoC)
G :C 58.5, 59.5 ~5.1 1.8 (G), 3.5 (C)
Dap : T 56.9, 58.4 ~4.6 2.4 (Dap), 1.9 (T)
Dap : Psi 56.7 ~4.5 2.4 (Dap), 1.8 (Psi)
Xan :Dpy[b] 47.5 ~2 ~1 (Xan), ~1.6 (Dpy)
2 H-bonds:
A :T 52.9, 55.9 ~6.1 4.2 (A), 1.8 (T)
A :Psi 54.4 ~6 4.2 (A), 1.8 (Psi)
Hyp : C 52.8, 54.6 ~4.5 ~1 (Hyp), 3.5 (C)
Hyp : Dpy 47.5 ~1.8 1 (Hyp), 1.6 (Dpy)
[a]

Calculations were made using model presented in reference [63].

[b]

The pH in this experiment was measured at 5.4.