Table 4.
Base pair | Melting temp. (°C) | ΔpKa | pKa 3pH for each base pH was conducted at 7.9 |
---|---|---|---|
3 H-bonds: | |||
isoG :isoC | 61.5, 63.3 | ~4.8 | 1 (isoG), 3.7 (isoC) |
G :C | 58.5, 59.5 | ~5.1 | 1.8 (G), 3.5 (C) |
Dap : T | 56.9, 58.4 | ~4.6 | 2.4 (Dap), 1.9 (T) |
Dap : Psi | 56.7 | ~4.5 | 2.4 (Dap), 1.8 (Psi) |
Xan :Dpy[b] | 47.5 | ~2 | ~1 (Xan), ~1.6 (Dpy) |
2 H-bonds: | |||
A :T | 52.9, 55.9 | ~6.1 | 4.2 (A), 1.8 (T) |
A :Psi | 54.4 | ~6 | 4.2 (A), 1.8 (Psi) |
Hyp : C | 52.8, 54.6 | ~4.5 | ~1 (Hyp), 3.5 (C) |
Hyp : Dpy | 47.5 | ~1.8 | 1 (Hyp), 1.6 (Dpy) |
Calculations were made using model presented in reference [63].
The pH in this experiment was measured at 5.4.