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. 2014 Sep 30;9(9):e107026. doi: 10.1371/journal.pone.0107026

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© 2014 Fonseca et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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A) Spearman correlation distribution between the gene expression profiles inferred by different pipelines; B) correlation between two specific pipelines (the respective Spearman correlation is shown in plot A as a purple box); C) fold change between the gene expression values inferred by the same two pipelines - dots in red denote genes where the expression values are significantly different between the two selected pipelines (for a false discovery rate of ); D) read counts inferred by the two pipelines for the six selected (boxed) genes in plot C).

Inline graphic — A) Spearman correlation distribution between the gene expression profiles inferred by different pipelines; B) correlation between two specific pipelines (the respective Spearman correlation is shown in plot A as a purple box); C) fold change between the gene expression values inferred by the same two pipelines - dots in red denote genes where the expression values are significantly different between the two selected pipelines (for a false discovery rate of ); D) read counts inferred by the two pipelines for the six selected (boxed) genes in plot C).