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. 2014 Sep 30;9(9):e108513. doi: 10.1371/journal.pone.0108513

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© 2014 Flores et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

PMC Copyright notice

The query protein Q is hypothetical; the template t_i is associated with the catalytic site of protein 1ADO to emulate the local structures. (A) Input to the method: Q is the sequence of residues in the query structure; t_i (E, D, and K) is the template used to emulate the local structures in Q. (B) Emulated structures of t_i in Q; there are four possible combinations (lq₁, lq₂, lq₃, lq₄) that may match the template t_i.